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Report for CCDS84504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84504.1 Public Mus musculus 2 Sh3glb2 23 108 98 CCDS HistoryNCBI Gene:227700Re-query CCDS DB by CCDS ID:84504.1Re-query CCDS DB by GeneID:227700See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84504.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113621.9 ENSMUSP00000109251.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113621.9Link to Ensembl Protein Viewer:ENSMUSP00000109251.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113621Re-query CCDS DB by Protein ID:ENSMUSP00000109251
Original member Current member NCBI NM_001346806.2 NP_001333735.1 Accepted alive Link to Nucleotide Sequence:NM_001346806.2Link to Protein Sequence:NP_001333735.1Re-query CCDS DB by Nucleotide ID:NM_001346806Re-query CCDS DB by Protein ID:NP_001333735Link to BLAST:NP_001333735.1

Chromosomal Locations for CCDS 84504.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 30345320 30345427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30345699 30345939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30346059 30346073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30346353 30346453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30346611 30346700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30347081 30347104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30348555 30348617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30349226 30349237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30350288 30350380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30350584 30350717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30354853 30354981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30355261 30355402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30359143 30359205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1215 nt):
ATGGACTTCAACATGAAGAAGCTGGCGTCGGACGCGGGCATCTTCTTCACTCGGGCGGTGCAGTTCACAG
AGGAGAAGTTTGGCCAGGCTGAGAAGACGGAGCTTGACGCCCACTTTGAAAACCTCCTAGCTCGGGCAGA
CAGCACCAAGAACTGGACAGAGCGGATCCTGAGGCAGACCGAGGTGCTGCTGCAGCCCAACCCCAGTGCT
CGAGTGGAGGAGTTCCTATATGAGAAGCTGGACAGAAAGGTGCCCTCGAGAGTCACCAATGGGGAGCTGC
TGGCTCAGTACATGGCGGAGGCAGCCAGCGAGCTGGGCCCCAGCACTCCCTACGGGAAGACGCTGATCAA
GGTGTCAGAAGCTGAGAAGCGCCTCGGAGCAGCAGAGCGGGATTTCATTCACACTGCCTCCCTCAGCTTC
CTCACACCCCTGCGGAACTTCCTAGAGGGGGACTGGAAAACGATTTCGAAGGAGAGGCGGCTCCTGCAGA
ACCGGCGTCTTGACCTGGATGCCTGCAAAGCCCGGCTAAAGAAGGCCAAGGCAGCCGAAGCCAAAGCCAC
GTGTGAGGGCGATACGGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACATTCTATCGGCCAGCGCC
TCCGCGCTTTGGAACGATGAAGTCGACAAGGCTGAGCAGGAGCTTCGAGTGGCGCAGACAGAGTTTGACC
GGCAGGCAGAAGTGACCCGTCTCCTGCTGGAGGGGATCAGCAGTACTCATGTGAACCACCTTCGCTGCCT
CCATGAGTTCGTCAAGTCTCAGACAACCTACTATGCACAGTGCTACCGCCACATGCTGGATCTGCAGAAA
CAGCTAGGCAGCTCCCAGGGTGCCATATTTCCAGGCACCTTCGTGGGCACCACAGAGCCTGCCTCCCCAC
CCCTGAGCAGCACCTCACCTACCACCACTGCGGCCACCATGCCTGTGGTACCTACTGGGGCTGTCTTGGC
CCCTCCAGAAGAGGCAGCCCTCTGCCTGGAGGAGGTGGCTCCCCCAGCCAGTGGGACTCGAAAGGCCCGG
GTGCTCTACGACTACGAGGCAGCTGACAGCAGTGAGCTGGCCCTGCTGGCTGATGAGCTCATCACTGTCT
ACAGCCTGCCAGGCATGGATCCCGACTGGCTCATTGGTGAGAGAGGCAACAAGAAGGGCAAGGTTCCTGT
CACCTACCTGGAACTTCTCAGCTAA

Translation (404 aa):
MDFNMKKLASDAGIFFTRAVQFTEEKFGQAEKTELDAHFENLLARADSTKNWTERILRQTEVLLQPNPSA
RVEEFLYEKLDRKVPSRVTNGELLAQYMAEAASELGPSTPYGKTLIKVSEAEKRLGAAERDFIHTASLSF
LTPLRNFLEGDWKTISKERRLLQNRRLDLDACKARLKKAKAAEAKATCEGDTVPDFQETRPRNYILSASA
SALWNDEVDKAEQELRVAQTEFDRQAEVTRLLLEGISSTHVNHLRCLHEFVKSQTTYYAQCYRHMLDLQK
QLGSSQGAIFPGTFVGTTEPASPPLSSTSPTTTAATMPVVPTGAVLAPPEEAALCLEEVAPPASGTRKAR
VLYDYEAADSSELALLADELITVYSLPGMDPDWLIGERGNKKGKVPVTYLELLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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