NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15703.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15703.1 Public Mus musculus 2 Nsun6 23 108 98 CCDS HistoryNCBI Gene:74455Re-query CCDS DB by CCDS ID:15703.1Re-query CCDS DB by GeneID:74455See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15703.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028034.14 ENSMUSP00000028034.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028034.14Link to Ensembl Protein Viewer:ENSMUSP00000028034.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000028034Re-query CCDS DB by Protein ID:ENSMUSP00000028034
Original member Current member EBI ENSMUST00000076435.8 ENSMUSP00000075766.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076435.8Link to Ensembl Protein Viewer:ENSMUSP00000075766.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000076435Re-query CCDS DB by Protein ID:ENSMUSP00000075766
Original member Current member EBI ENSMUST00000195749.5 ENSMUSP00000141924.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000195749.5Link to Ensembl Protein Viewer:ENSMUSP00000141924.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000195749Re-query CCDS DB by Protein ID:ENSMUSP00000141924
Original member Current member NCBI NM_001165941.2 NP_001159413.1 Accepted alive Link to Nucleotide Sequence:NM_001165941.2Link to Protein Sequence:NP_001159413.1Re-query CCDS DB by Nucleotide ID:NM_001165941Re-query CCDS DB by Protein ID:NP_001159413Link to BLAST:NP_001159413.1
Original member Current member NCBI NM_028950.5 NP_083226.3 Accepted alive Link to Nucleotide Sequence:NM_028950.5Link to Protein Sequence:NP_083226.3Re-query CCDS DB by Nucleotide ID:NM_028950Re-query CCDS DB by Protein ID:NP_083226Link to BLAST:NP_083226.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159413.1 476 Q7TS68 476 100% 0 0
NP_083226.3 476 Q7TS68 476 100% 0 0

Chromosomal Locations for CCDS 15703.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 14996313 14996546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 14998167 14998292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 15009410 15009558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 15013140 15013284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 15030029 15030148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 15036275 15036356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 15038074 15038227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 15039733 15039842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 15042227 15042306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 15047148 15047303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 15048922 15048996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGTATGTATTTCCAAAGATATCTTTGAGACCTGAAGTTGAAAACTATCTCAAAGAGAGCTTTTTGAACG
AGGAGGCTGTGTCTGCTTCAAGCAGACAAGAAGCAGAAAGGAAATTTGAGACTCTGCTGCTTCGCCTGTC
ACACCCTCCGTCGATGACAACTGTCAGAGTGAATACGCATTTAGGCTCAGTTCAGCATGTCAGAGGTCTG
CTGCTTGAAGAGCTCCAGAAGCAGTTTGGTGAATCCAGCATTCCTGTTGTTCAGCATCCAGCCCTCCCGG
ATGTCTTGCTCATCCCCATGACTGGACCAAGGAAGAATATAGAAAGACAACAGGGTGAAGTGATTGTTGG
CGCACAGTGTGGCAATGCAGTGTTAAGAGGGGCCCATGTCTATGTTCCAGGAATTGTGTCAGCTTCAAAA
TTTATGAAAGCTGGAGATGTTATTTCCGTGTATTCTGATATTAACGGCAAATGTAAGAAAGGAGCCAAAG
AATTTGATGGAACTAAAGTATTTCTCGGAAACGGAATTTCTGAACTGAGCCGCAAAGATATCTTCAATGG
GTTACCTGATCTGAAAGGTATAGGCATAAGAATGACAGAACCCATATATCTCAGTCCCTCGTTTGACAAT
GTTCTACCCAGTTATATATTTTTACAGAATTTACCATCTACAGTTGTAGCTCATGTTCTTGATCCTCAAC
CTGGAGAGAAGATTCTAGATATGTGTGCAGCCCCTGGGGGCAAAACTACACATACTGCAGCACTGATGCA
GGACAAGGGAGAAGTAATAGCATTGGACAAAATATTGACAAAAGTGAACAAACTGAAGCAGAATGCTTCA
TTATTAGGGCTTCATTCTATCCGGGCATTTTGCTTCGATGCAACAAAGGCACTTAAGCTTGATACTACCG
ATGGCATAGAAGGGGGGCCTCCATTCTTACCAGAATCTTTTGACCGAATTATCCTTGATGCACCCTGCAG
TGGAATGGGACAGAGGCCAAATATGGCTTGTACTTGGACTTTAAAGGAAGTGACATCCTATCAGCCACTA
CAGCGAAAACTCCTTCATGTGGCAGTTCAACTCCTGAAGCCAGGGGGAGTGCTGGTCTACAGCACATGCA
CAATAACCTTGGCAGAAAATGAAGAGCAAGTTGCCTGGGCCCTCCGAACATTCCCCTGCCTTCAGCTTCA
ACCCCAGGAACCACAGATTGGAGGAGAAGGGATGGTGGGAGCTGGCCTGACATTGGAGCAATTGAAGCAG
CTGCAGCGATTTGATCCGTCTGTTGTACCACTGCAGAACATGGACACTGATTCTCTTGGAGAGGCCAGAA
GGGAAGACATGATTTGGTTGGCCAACAAAGACTGTATAGGCTTCTTTATTGCAAAGTTTCTAAAATGTCA
AAGCACAAAAGCGAAGGTTTCTCAGAAATGA

Translation (476 aa):
MYVFPKISLRPEVENYLKESFLNEEAVSASSRQEAERKFETLLLRLSHPPSMTTVRVNTHLGSVQHVRGL
LLEELQKQFGESSIPVVQHPALPDVLLIPMTGPRKNIERQQGEVIVGAQCGNAVLRGAHVYVPGIVSASK
FMKAGDVISVYSDINGKCKKGAKEFDGTKVFLGNGISELSRKDIFNGLPDLKGIGIRMTEPIYLSPSFDN
VLPSYIFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTTHTAALMQDKGEVIALDKILTKVNKLKQNAS
LLGLHSIRAFCFDATKALKLDTTDGIEGGPPFLPESFDRIILDAPCSGMGQRPNMACTWTLKEVTSYQPL
QRKLLHVAVQLLKPGGVLVYSTCTITLAENEEQVAWALRTFPCLQLQPQEPQIGGEGMVGAGLTLEQLKQ
LQRFDPSVVPLQNMDTDSLGEARREDMIWLANKDCIGFFIAKFLKCQSTKAKVSQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH