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Report for CCDS15666.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15666.1 Public Mus musculus 2 Cdc123 23 108 98 CCDS HistoryNCBI Gene:98828Re-query CCDS DB by CCDS ID:15666.1Re-query CCDS DB by GeneID:98828See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15666.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043864.8 ENSMUSP00000043033.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043864.8Link to Ensembl Protein Viewer:ENSMUSP00000043033.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000043864Re-query CCDS DB by Protein ID:ENSMUSP00000043033
Original member Current member NCBI NM_133837.5 NP_598598.1 Accepted alive Link to Nucleotide Sequence:NM_133837.5Link to Protein Sequence:NP_598598.1Re-query CCDS DB by Nucleotide ID:NM_133837Re-query CCDS DB by Protein ID:NP_598598Link to BLAST:NP_598598.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598598.1 336 Q8CII2-1 336 100% 0 0

Chromosomal Locations for CCDS 15666.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 5794854 5794880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5795549 5795686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5798361 5798489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5803947 5803975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5804911 5805033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5807431 5807506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5810796 5810844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5821276 5821382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5823102 5823197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5833081 5833113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5833656 5833713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5841953 5842024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5844835 5844908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGAAGAAGGAGCATGTTAGTCACTGTCAGTTCTCCGCGTGGTACCCACTTTTCCGAAGCCTTACCATCA
AGAGTGTCATCCTCCCGCTTCCTCAGAATGTGAAAGACTATCTACTTGATGATGGGACTCTGGTGGTCTC
AGGAAGGGAAGATCCGCCAACATGCTCCCAGTCAGACAGTGGTAACGAAGCAGAGGAAACACAGTGGTCC
GATGATGAGAGCACAGCCACACTTACGGCACCAGAGTTTCCTGAGTTCAACACTCAAGTCCAAGAAGCTA
TCAATTCGCTGGGGGGTAGTGTCTTCCCTAAGCTTAACTGGAGTGCCCCAAGGGATGCGTACTGGATAGC
GATGAACAGTTCCCTGAAGTGTAAAACTCTCAGTGATATCTTCCTGCTTTTCAAGAGTTCTGATTTCATC
ACCCATGACTTCACACAGCCGTTTATTCATTGCACTGATGACTCTCCAGACCCTTGTATAGAGTACGAGC
TTGTTCTCCGAAAATGGTGTGAATTAATTCCTGGGGCTGAATTCCGATGTTTTGTCAAAGAAAATAAGCT
TATTGGTATTTCTCAGAGGGATTACACACAATACTATGATCATATTTCTAAGCAAAAAGAAGAAATTTGC
AGATGCATTCAAGACTTTTTCAAGGAACACCTACAGTATAAATTCTTAGATGAAGACTTTGTGTTCGATA
TATACAGGGACAGTAGGGGGAAGGTGTGGCTCATTGACTTTAATCCATTTGGGGAGGTCACAGACTCACT
GTTGTTTACTTGGGAAGAGCTAACATCTGAGAACAACCTACGTGGTGAGGTCACTGAAGGAGATGCTCAG
GAGCAGGATTCTCCAGCCTTCCGTTGCACAAACAGTGAAGTCACAGTGCAGCCCAGCCCCTATCTGAGCT
TCGGGCTGCCCAAGGACTTTGTAGACCTTTCCACCGGGGAGGATGCTCACAAGCTCATCGATTTCCTTAA
GCTGAAAAGAAATGAGCAAGAGGACGACTGA

Translation (336 aa):
MKKEHVSHCQFSAWYPLFRSLTIKSVILPLPQNVKDYLLDDGTLVVSGREDPPTCSQSDSGNEAEETQWS
DDESTATLTAPEFPEFNTQVQEAINSLGGSVFPKLNWSAPRDAYWIAMNSSLKCKTLSDIFLLFKSSDFI
THDFTQPFIHCTDDSPDPCIEYELVLRKWCELIPGAEFRCFVKENKLIGISQRDYTQYYDHISKQKEEIC
RCIQDFFKEHLQYKFLDEDFVFDIYRDSRGKVWLIDFNPFGEVTDSLLFTWEELTSENNLRGEVTEGDAQ
EQDSPAFRCTNSEVTVQPSPYLSFGLPKDFVDLSTGEDAHKLIDFLKLKRNEQEDD


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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