NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29856.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29856.1 Public Mus musculus 19 Sfxn3 23 108 98 CCDS HistoryNCBI Gene:94280Re-query CCDS DB by CCDS ID:29856.1Re-query CCDS DB by GeneID:94280See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29856.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062213.12 ENSMUSP00000059419.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062213.12Link to Ensembl Protein Viewer:ENSMUSP00000059419.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000062213Re-query CCDS DB by Protein ID:ENSMUSP00000059419
Original member Current member NCBI NM_001362381.1 NP_001349310.1 Accepted alive Link to Nucleotide Sequence:NM_001362381.1Link to Protein Sequence:NP_001349310.1Re-query CCDS DB by Nucleotide ID:NM_001362381Re-query CCDS DB by Protein ID:NP_001349310Link to BLAST:NP_001349310.1
Original member Current member NCBI NM_053197.4 NP_444427.1 Accepted alive Link to Nucleotide Sequence:NM_053197.4Link to Protein Sequence:NP_444427.1Re-query CCDS DB by Nucleotide ID:NM_053197Re-query CCDS DB by Protein ID:NP_444427Link to BLAST:NP_444427.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349310.1 321 Q91V61-1 321 100% 0 0
NP_444427.1 321 Q91V61-1 321 100% 0 0

Chromosomal Locations for CCDS 29856.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 45049107 45049267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45049744 45049914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45050228 45050326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45050650 45050725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45050876 45050961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45052096 45052223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45052411 45052460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45053670 45053719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45054302 45054349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45054605 45054701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGGGTGACCTGCCCTTAAATATCAACATCCAGGAACCTCGGTGGGACCAAAGCACATTTCTAGGCAGAG
CCCGGCATTTCTTCACAGTCACTGATCCCCGAAATCTGCTGCTGTCCGGGGAACAGCTGGAAGCTTCCCG
GAACATCGTGCAGAATTACAGGGCTGGTGTGGCAACCCCGGGTCTCACTGAGGACCAGCTATGGCGAGCC
AAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAG
CCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACAGGAAGACTCCGACTGTGGT
GTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCC
ATCACTGTGCAGCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGAC
TCAAGTCTCTCACCAAGCACCTGCCCCCGCTAGTCGGTCGATTCGTGCCCTTTGCAGCTGTGGCCGCTGC
CAACTGCATCAACATCCCCCTGATGAGGCAGAGGGAGCTGCAGGTGGGCATCCCAGTGACTGATGAGGCT
GGTCAGAGGCTTGGCCACTCGGTGACTGCTGCCAAACAGGGAATCTTCCAGGTGGTGATATCAAGAATCG
GAATGGCGATTCCCGCCATGGCCATTCCCCCGGTGATCATGAACACTCTGGAGAAGAAAGACTTCCTGAA
GCGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTGCTTGGTATTTGCCACACCC
CTGTGCTGCGCTCTGTTCCCTCAGAGAAGCTCCATACATGTGACCAGGCTGGAGCCGGAGCTGAGAGCTC
AGATCCAAGCACAAAACCCCAGCATCGATGTGGTTTACTACAACAAGGGGCTTTGA

Translation (321 aa):
MGDLPLNINIQEPRWDQSTFLGRARHFFTVTDPRNLLLSGEQLEASRNIVQNYRAGVATPGLTEDQLWRA
KYVYDSAFHPDTGEKVVLIGRMSAQVPMNMTITGCMLTFYRKTPTVVFWQWVNQSFNAIVNYSNRSGDAP
ITVQQLGTAYVSATTGAVATALGLKSLTKHLPPLVGRFVPFAAVAAANCINIPLMRQRELQVGIPVTDEA
GQRLGHSVTAAKQGIFQVVISRIGMAIPAMAIPPVIMNTLEKKDFLKRRPWLGAPLQVGLVGFCLVFATP
LCCALFPQRSSIHVTRLEPELRAQIQAQNPSIDVVYYNKGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH