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Report for CCDS37960.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37960.1 Public Mus musculus 19 Papss2 23 108 98 CCDS HistoryNCBI Gene:23972Re-query CCDS DB by CCDS ID:37960.1Re-query CCDS DB by GeneID:23972See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37960.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025833.6 ENSMUSP00000025833.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025833.6Link to Ensembl Protein Viewer:ENSMUSP00000025833.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025833Re-query CCDS DB by Protein ID:ENSMUSP00000025833
Original member Current member NCBI NM_011864.3 NP_035994.2 Accepted alive Link to Nucleotide Sequence:NM_011864.3Link to Protein Sequence:NP_035994.2Re-query CCDS DB by Nucleotide ID:NM_011864Re-query CCDS DB by Protein ID:NP_035994Link to BLAST:NP_035994.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035994.2 621 O88428 621 100% 0 0

Chromosomal Locations for CCDS 37960.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 32620154 32620186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32633886 32634000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32637034 32637269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32638254 32638392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32638919 32639037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32639218 32639331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32641300 32641411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32646329 32646343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32651896 32652101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32660579 32660714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32663055 32663323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32664421 32664650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32665426 32665567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1866 nt):
ATGTCTGCAAATTTCAAAATGAACCATAAAAGAGACCAGCAAAAATCCACCAATGTGGTCTACCAGGCCC
ATCATGTGAGCAGGAACAAGAGAGGACAAGTGGTTGGAACCAGGGGAGGATTCCGAGGATGTACCGTGTG
GCTAACAGGTCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTATCTCAC
GCCATCCCATGTTACTCTCTGGATGGGGACAATGTCCGTCATGGCCTTAATAAGAACCTGGGATTCTCTG
CGGGGGACCGAGAAGAGAATATCCGCCGGATCGCGGAGGTGGCCAGGCTCTTTGCCGACGCCGGCCTGGT
TTGCATCACCAGCTTTATCTCTCCTTTTGCAAAGGATCGTGAGAATGCCCGAAAAATCCACGAATCAGCA
GGACTCCCGTTCTTTGAGATCTTTGTAGATGCGCCTTTAAATATCTGTGAAAGCCGAGACGTAAAAGGAC
TCTACAAACGAGCCCGAGCAGGAGAGATTAAAGGGTTTACAGGCATCGATTCTGACTATGAGAAACCTGA
AACTCCAGAGTGTGTGCTGAAGACCAACCTGTCTTCAGTAAGCGACTGTGTGCAACAGGTGGTGGAACTT
TTGCAGGAGCAGAACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACA
AAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAGCTGGATCTGCAGTG
GGTGCAGATTCTGAGTGAAGGCTGGGCCACTCCCCTCAAAGGCTTTATGCGGGAGAAGGAGTACTTGCAA
ACTCTACACTTCGACACTCTACTGGACGGCGTGGTTCCCCGTGATGGAGTCATCAACATGAGTATTCCCA
TTGTATTGCCCGTTTCTGCGGATGACAAGGCACGGCTCGAAGGGTGCAGCAAATTTGCCTTGATGTACGA
AGGTCGGAGGGTCGCTCTATTACAGGACCCTGAATTCTATGAGCATAGGAAAGAGGAGCGCTGTTCTCGT
GTGTGGGGAACAGCCACTGCAAAGCACCCCCATATCAAAATGGTGATGGAAAGTGGGGACTGGCTTGTTG
GTGGAGACCTACAGGTGCTAGAGAGAATAAGGTGGGACGATGGGCTGGACCAATACCGCCTTACGCCTCT
GGAGCTCAAACAGAAGTGTAAAGACATGAATGCTGATGCCGTGTTTGCATTCCAGTTGCGCAATCCTGTC
CACAATGGTCATGCCCTCCTGATGCAGGACACCCGCCGCAGGCTCCTGGAGAGGGGTTACAAGCACCCAG
TCCTCCTGCTCCACCCTCTTGGGGGCTGGACCAAGGACGATGACGTACCTCTGGAATGGAGGATGAAACA
GCATGCAGCTGTACTGGAGGAAAGGGTCCTGGATCCCAAGTCAACTATTGTTGCCATCTTTCCATCTCCT
ATGTTATATGCTGGTCCCACAGAGGTCCAGTGGCATTGCAGATGCCGGATGATTGCAGGAGCCAATTTCT
ACATTGTGGGTAGGGATCCCGCAGGAATGCCCCATCCTGAGACAAAGAAAGACCTATATGAACCCACCCA
CGGGGGCAAGGTCTTGAGTATGGCCCCTGGCCTTACCTCTGTGGAAATAATTCCGTTCCGAGTGGCTGCC
TACAATAAAATTAAAAAGGCCATGGACTTTTATGATCCAGCAAGGCACGAGGAGTTTGACTTCATCTCAG
GAACTCGCATGAGGAAGCTCGCCCGGGAAGGAGAAGATCCCCCAGATGGCTTCATGGCCCCGAAAGCGTG
GAAAGTGTTGACAGATTACTACAGGTCTCTGGAGAAGACCAACTAG

Translation (621 aa):
MSANFKMNHKRDQQKSTNVVYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTISFALEEYLVSH
AIPCYSLDGDNVRHGLNKNLGFSAGDREENIRRIAEVARLFADAGLVCITSFISPFAKDRENARKIHESA
GLPFFEIFVDAPLNICESRDVKGLYKRARAGEIKGFTGIDSDYEKPETPECVLKTNLSSVSDCVQQVVEL
LQEQNIVPHTTIKGIHELFVPENKVDQIRAEAETLPSLPITKLDLQWVQILSEGWATPLKGFMREKEYLQ
TLHFDTLLDGVVPRDGVINMSIPIVLPVSADDKARLEGCSKFALMYEGRRVALLQDPEFYEHRKEERCSR
VWGTATAKHPHIKMVMESGDWLVGGDLQVLERIRWDDGLDQYRLTPLELKQKCKDMNADAVFAFQLRNPV
HNGHALLMQDTRRRLLERGYKHPVLLLHPLGGWTKDDDVPLEWRMKQHAAVLEERVLDPKSTIVAIFPSP
MLYAGPTEVQWHCRCRMIAGANFYIVGRDPAGMPHPETKKDLYEPTHGGKVLSMAPGLTSVEIIPFRVAA
YNKIKKAMDFYDPARHEEFDFISGTRMRKLAREGEDPPDGFMAPKAWKVLTDYYRSLEKTN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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