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Report for CCDS37945.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37945.1 Public Mus musculus 19 Smarca2 23 108 98 CCDS HistoryNCBI Gene:67155Re-query CCDS DB by CCDS ID:37945.1Re-query CCDS DB by GeneID:67155See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37945.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112637.9 ENSMUSP00000108256.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112637.9Link to Ensembl Protein Viewer:ENSMUSP00000108256.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112637Re-query CCDS DB by Protein ID:ENSMUSP00000108256
Original member Current member EBI ENSMUST00000208589.1 ENSMUSP00000146890.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208589.1Link to Ensembl Protein Viewer:ENSMUSP00000146890.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208589Re-query CCDS DB by Protein ID:ENSMUSP00000146890
Original member Current member EBI ENSMUST00000208751.1 ENSMUSP00000146924.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208751.1Link to Ensembl Protein Viewer:ENSMUSP00000146924.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208751Re-query CCDS DB by Protein ID:ENSMUSP00000146924
Original member NCBI NM_026003.2 NP_080279.1 Updated not alive Link to Nucleotide Sequence:NM_026003.2Link to Protein Sequence:NP_080279.1Re-query CCDS DB by Nucleotide ID:NM_026003Re-query CCDS DB by Protein ID:NP_080279
Current member NCBI NM_026003.3 NP_080279.1 Accepted alive Link to Nucleotide Sequence:NM_026003.3Link to Protein Sequence:NP_080279.1Re-query CCDS DB by Nucleotide ID:NM_026003Re-query CCDS DB by Protein ID:NP_080279Link to BLAST:NP_080279.1

Chromosomal Locations for CCDS 37945.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 26751851 26752041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26770938 26771043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26771508 26771609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26774173 26774305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26776101 26776243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26777335 26777370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAG
ATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACT
AACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACAGTTCAGGGCGACAGCTCAGT
GAAGTCTTCATTCAGTTACCTTCCAGGAAAGACTTACCAGAATACTATGAATTAATTAGGAAGCCAGTGG
ATTTCAAAAAGATAAAGGAGCGAATCCGTAATCATAAGTATCGGAGCCTGGGAGACCTGGAGAAAGACGT
CATGCTTCTCTGTCACAACGCACAGACATTCAACTTGGAAGGATCCCAGATCTACGAAGACTCCATTGTC
CTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATG
AAGAAGAGGAAGAAGATGATGAAGAGGAGTCGGAGTCAGAGGCGAAATCTGTGAAGGTGAAAATCAAGCT
GAATAAAAAGGAAGAGAAAGGCCGGGACACAGGGAAGGGCAAGAAGCGGCCAAACCGAGGCAAAGCCAAA
CCCGTCGTGAGCGATTTTGACAGTGACGAGGAACAGGAAGAGAACGAACAGTCAGAAGCAAGTGGAACTG
ATAACGAGTGA

Translation (236 aa):
MEEEVRLKKRKRRRNVDKDPVKEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDSSGRQLS
EVFIQLPSRKDLPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIV
LQSVFKSARQKIAKEEESEEESNEEEEEDDEEESESEAKSVKVKIKLNKKEEKGRDTGKGKKRPNRGKAK
PVVSDFDSDEEQEENEQSEASGTDNE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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