NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29481.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29481.1 Public Mus musculus 19 Frmd8 23 108 98 CCDS HistoryNCBI Gene:67457Re-query CCDS DB by CCDS ID:29481.1Re-query CCDS DB by GeneID:67457See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29481.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025728.12 ENSMUSP00000025728.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025728.12Link to Ensembl Protein Viewer:ENSMUSP00000025728.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025728Re-query CCDS DB by Protein ID:ENSMUSP00000025728
Original member Current member NCBI NM_026169.4 NP_080445.1 Accepted alive Link to Nucleotide Sequence:NM_026169.4Link to Protein Sequence:NP_080445.1Re-query CCDS DB by Nucleotide ID:NM_026169Re-query CCDS DB by Protein ID:NP_080445Link to BLAST:NP_080445.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080445.1 466 Q3UFK8 466 100% 0 0

Chromosomal Locations for CCDS 29481.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5852621 5852742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5856585 5856789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5862251 5862394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5863224 5863347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5865069 5865293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5869437 5869603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5869736 5869794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5870011 5870112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5873169 5873336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5874710 5874794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGGAGGGGGCAGAAGGCAACGCGGGGCAGCCCGGCCCTGCGGAGCGGTCCCACCGAAGTAGCGTCTCTT
CAGTGGGTGCCCGAGCAGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCCCTGGCCGTGGA
GAATTTGTCCTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGACGTG
GCTTTGGAGGCCTTTGCACTCTGGCTCGTCTCCCCTCTCTTGGAGGTGCAATTGAAACCCAAGCACCAGC
CCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGC
CATGGATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAGATCCAT
GATGAGGAGGTCTTGCGGCTGCTCTATGAGGAAGCCAAGGGCAATGTGCTGACCGCTCGGTACCCTTGTG
ACTTGGAGGACTGCGAGGTGCTGGGTGGCCTTGTGTGCCGTGTGCAGCTTGGGCCCTACCAGCCTGGCCA
GCCTGCCGCCTGCACTCTGAGAGAGAAGCTGGACTCCTTCCTCCCTGCCCACCTCTGCAAGCGAGGGCAT
GGCCTCTTTGCTGCCTTCCGGGGCCGTGGGGCCAAGACTGGGCCAGGTGAGCAAGGCCTGCTGAATGCCT
ACCGCCAGGTAAAGGAAGTGACAGGCAACAACAGTGAACGTGAGGCCACCTTGGGCTCCCACTACCGCGC
ATACCTCCTCAAGTGCCACGAGCTGCCCTTCTACGGGTGTGCCTTCTTCCATGGCGAGGTTGACAAGCCA
GCCCAGGGCTTCTTGCATCGAGGTGGGCGCAAACCAGTGACTGTGGCCATCAGTCTGGAGGGTGTGCACG
TCATCGACAACAGGGAGAAGCATGTGCTGCTGGGCCTGCGCTTTCAGGAGCTGTCGTGGGATCACACTTC
CCCTGAGGAGGAAGAGCCTGTCCTGTGGCTGGAGTTCGATGGTGACAGTGAGGGCACGCCTGTCAACAAG
CTGCTAAGGATCTACTCCAAGCAGGCTGAGCTGATGAGCGGCCTCATTGAGTACTGCATTGAGCTGAGCC
AGGCTGCCGAGCCTACTCTTTCCCAGGAGAGTGCATCCGGCCCTCACGAAGCTCCCAGCCCCTCTCCACC
TCCCACCCAGCGCCCCAAGCTGCGAAGGCAGGGTAGCGTGGTGTGTAGCCGGATTCAGCATCTCTCTACC
ATTGACTATGTGGAAGACGGCAAGGGGATCAAGCGGGTGAAACCAAAGCGAACCACCTCCTTCTTCAGCC
GACAGCTCTCCTCCAGCCAGGGAAGCTACACCGTGGTGCAGCCCACCGACGACAGCCTGGAGCAGAGCTG
A

Translation (466 aa):
MEGAEGNAGQPGPAERSHRSSVSSVGARAADVLVYLADDTVVPLAVENLSSISAHELHRAVREVLQLPDV
ALEAFALWLVSPLLEVQLKPKHQPYKLGRQWPELLLRFTNASDDDVAMDEPSLQFRRNVFFPRRRELQIH
DEEVLRLLYEEAKGNVLTARYPCDLEDCEVLGGLVCRVQLGPYQPGQPAACTLREKLDSFLPAHLCKRGH
GLFAAFRGRGAKTGPGEQGLLNAYRQVKEVTGNNSEREATLGSHYRAYLLKCHELPFYGCAFFHGEVDKP
AQGFLHRGGRKPVTVAISLEGVHVIDNREKHVLLGLRFQELSWDHTSPEEEEPVLWLEFDGDSEGTPVNK
LLRIYSKQAELMSGLIEYCIELSQAAEPTLSQESASGPHEAPSPSPPPTQRPKLRRQGSVVCSRIQHLST
IDYVEDGKGIKRVKPKRTTSFFSRQLSSSQGSYTVVQPTDDSLEQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH