NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50334.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50334.1 Public Mus musculus 18 Slc66a2 23 108 98 CCDS HistoryNCBI Gene:66943Re-query CCDS DB by CCDS ID:50334.1Re-query CCDS DB by GeneID:66943See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50334.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070135.7 ENSMUSP00000069986.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070135.7Link to Ensembl Protein Viewer:ENSMUSP00000069986.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000070135Re-query CCDS DB by Protein ID:ENSMUSP00000069986
Original member Current member EBI ENSMUST00000129043.7 ENSMUSP00000118670.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000129043.7Link to Ensembl Protein Viewer:ENSMUSP00000118670.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000129043Re-query CCDS DB by Protein ID:ENSMUSP00000118670
Original member Current member EBI ENSMUST00000123750.7 ENSMUSP00000121890.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000123750.7Link to Ensembl Protein Viewer:ENSMUSP00000121890.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000123750Re-query CCDS DB by Protein ID:ENSMUSP00000121890
Original member Current member NCBI NM_001164420.1 NP_001157892.1 Accepted alive Link to Nucleotide Sequence:NM_001164420.1Link to Protein Sequence:NP_001157892.1Re-query CCDS DB by Nucleotide ID:NM_001164420Re-query CCDS DB by Protein ID:NP_001157892Link to BLAST:NP_001157892.1
Original member Current member NCBI NM_001164421.1 NP_001157893.1 Accepted alive Link to Nucleotide Sequence:NM_001164421.1Link to Protein Sequence:NP_001157893.1Re-query CCDS DB by Nucleotide ID:NM_001164421Re-query CCDS DB by Protein ID:NP_001157893Link to BLAST:NP_001157893.1
Original member Current member NCBI NM_001164422.1 NP_001157894.1 Accepted alive Link to Nucleotide Sequence:NM_001164422.1Link to Protein Sequence:NP_001157894.1Re-query CCDS DB by Nucleotide ID:NM_001164422Re-query CCDS DB by Protein ID:NP_001157894Link to BLAST:NP_001157894.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157892.1 253 Q80XM9-2 253 100% 0 0
NP_001157893.1 253 Q80XM9-2 253 100% 0 0
NP_001157894.1 253 Q80XM9-2 253 100% 0 0

Chromosomal Locations for CCDS 50334.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 80256916 80257118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80263420 80263553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80283276 80283492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80291576 80291783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGGAAGCGGAAGGCTTGGGATGGCTTCTGGTCCCGCTGCACCAGCTGGTTTCCTGGGTGGCCGCTGGGG
CCATGGTCTTCGGAGGGGTAGTACCGTACATACCCCAATACAGGGACATCCGGAGGACTCAGAATGCCGA
CGGTTTCTCCACCCATGTGTGCCTGGTGCTATTGGTGGCCAATATTTTACGGATACTCTTTTGGTTCGGA
AGGCACTTCGAGTCCCCGCTCCTGTGGCAGAGCATAGTCATGATCCTTACGATGTTGCTCATGCTGAAGC
TCTGCACCGAGGTCCGCGTGGCCAATGAGCTGAACATCAAGCGCCGCTCCTTTGCAGACTTTGATCCTCA
CCACTTCTGGCACTGGAGCAGCTTCTCAGACTATGTGCAGTGTGTCCTGGCCTTCACGGGCGTGGCGGGC
TACATCACCTACCTGTCCATCGACTCGGCTCTGTTTGTGGAGACGCTGGGCTTCCTGGCTGTGCTGACTG
AAGCCATGCTGGGGGTGCCACAGCTGTACCGAAACTACTGCCACCGCTCCACGGAGGGCATGAGCCTCAA
GATGGTGCTCATGTGGACAAGTGGTGACACCTTCAAGACGGCCTACTTCTTGCTCAACGGCGCACCTCTG
CAGTTCTCAGTCTGCGGTCTACTACAGGTCATGGTGGACCTGGTCATCCTGGGGCAGGCCTATGCCTTTG
CTCACCACCCCCAGAAGCCAGCGGCCCATGCAGTGCACCCTGCCAGTACCAAGGCTCTCTGA

Translation (253 aa):
MEAEGLGWLLVPLHQLVSWVAAGAMVFGGVVPYIPQYRDIRRTQNADGFSTHVCLVLLVANILRILFWFG
RHFESPLLWQSIVMILTMLLMLKLCTEVRVANELNIKRRSFADFDPHHFWHWSSFSDYVQCVLAFTGVAG
YITYLSIDSALFVETLGFLAVLTEAMLGVPQLYRNYCHRSTEGMSLKMVLMWTSGDTFKTAYFLLNGAPL
QFSVCGLLQVMVDLVILGQAYAFAHHPQKPAAHAVHPASTKAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH