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Report for CCDS50261.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50261.1 Public Mus musculus 18 Rnf14 23 108 98 CCDS HistoryNCBI Gene:56736Re-query CCDS DB by CCDS ID:50261.1Re-query CCDS DB by GeneID:56736See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50261.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170811.7 ENSMUSP00000133070.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170811.7Link to Ensembl Protein Viewer:ENSMUSP00000133070.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170811Re-query CCDS DB by Protein ID:ENSMUSP00000133070
Original member Current member NCBI NM_001164622.1 NP_001158094.1 Accepted alive Link to Nucleotide Sequence:NM_001164622.1Link to Protein Sequence:NP_001158094.1Re-query CCDS DB by Nucleotide ID:NM_001164622Re-query CCDS DB by Protein ID:NP_001158094Link to BLAST:NP_001158094.1

Chromosomal Locations for CCDS 50261.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 38307937 38308395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 38309485 38309713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 38313212 38313384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 38314673 38314803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 38316525 38316612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGCAGTTTCTTAAGGAGGAGACCCTCACCTACCTGAATATTGTCTCTCCTTTTGAGCTCAAGATGGGGT
CTCAGAAAAAAGTTCAGAGAAGGGCAACAGCCCAGGCCTCTTCCAGCACAGAGCTTGGTGTGGGAGGAGC
TGCTGCGGCGGATGTAGACCAAGAAGAAACTGTGGATGAGAGAGCTGTACAGGATGTAGAGTCATTGTCA
AGTCTGATCCAGGAGATCTTGGACTTCAATCAAGCTCGGCAGACGAAGTGCTTCAATAGTAAACTGTTCT
TGTGCAGCATCTGTTTCTGTGAGAAGCTGGGTAGTGATTGCATGTACTTCTTGGAGTGCAAGCATGTATA
CTGCAAAGCCTGTCTGAAGGATTACTTTGAAATCCAGATCAAAGATGGTCAAGTTAAATGCCTCAACTGT
CCAGAGCCACAGTGCCCTTCAGTGGCGACTCCTGGTCAGGTCAAAGAGCTGGTAGAAGCAGACTTGTTTG
CTCGCTATGACCGTCTCCTCCTGCAGTCTACCTTGGATCTAATGGCAGATGTGGTGTATTGTCCCCGTCC
ATGCTGCCAGCTCCCTGTGATGCAAGAGCCTGGTGGTACCATGGCTATCTGCTCCAGCTGCAATTTTGCC
TTCTGTACCTTATGCAGACTGACCTATCACGGGCTTTCTCCATGTAAGGTAACTGCAGAGAAATTAATAG
ACTTACGAAATGAATACCTACAAGCAGATGAAGCTACTAAGAGGTTCTTGGAACAGAGGTATGGCAAGAG
GGTGATTCAGAAGGCCCTGGAGGAGATGGAAAGTAAAGACTGGCTGGAGAAGAACTCCAAGAGCTGCCCC
TGCTGTGGCACACCCATACAGAAATTAGACGGCTGCAACAAGATGACTTGCACTGGCTGTATGCAGTATT
TCTGCTGGATTTGCATGGGTTCTCTCTCTCGAGCAAATCCTTACAGACATTTCACTGATTCTGAGTCTCC
ATGCTTTAACAGGTTGTTCCATGCCGTGGATATTAATGGTGATATGTGGGAAGATGAAATTGAGGAGGAC
GACGATGATGAAGACGACGACGACGACTAG

Translation (359 aa):
MQFLKEETLTYLNIVSPFELKMGSQKKVQRRATAQASSSTELGVGGAAAADVDQEETVDERAVQDVESLS
SLIQEILDFNQARQTKCFNSKLFLCSICFCEKLGSDCMYFLECKHVYCKACLKDYFEIQIKDGQVKCLNC
PEPQCPSVATPGQVKELVEADLFARYDRLLLQSTLDLMADVVYCPRPCCQLPVMQEPGGTMAICSSCNFA
FCTLCRLTYHGLSPCKVTAEKLIDLRNEYLQADEATKRFLEQRYGKRVIQKALEEMESKDWLEKNSKSCP
CCGTPIQKLDGCNKMTCTGCMQYFCWICMGSLSRANPYRHFTDSESPCFNRLFHAVDINGDMWEDEIEED
DDDEDDDDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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