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Report for CCDS37781.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37781.1 Public Mus musculus 18 Pcdhga3 23 108 98 CCDS HistoryNCBI Gene:93711Re-query CCDS DB by CCDS ID:37781.1Re-query CCDS DB by GeneID:93711See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37781.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073447.7 ENSMUSP00000073150.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073447.7Link to Ensembl Protein Viewer:ENSMUSP00000073150.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000073447Re-query CCDS DB by Protein ID:ENSMUSP00000073150
Original member Current member NCBI NM_033586.2 NP_291064.1 Accepted alive Link to Nucleotide Sequence:NM_033586.2Link to Protein Sequence:NP_291064.1Re-query CCDS DB by Nucleotide ID:NM_033586Re-query CCDS DB by Protein ID:NP_291064Link to BLAST:NP_291064.1

Chromosomal Locations for CCDS 37781.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37674496 37676907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37825021 37825079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37833265 37833353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37839903 37840129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2787 nt):
ATGATCCGTCTGGGACAAGGAACCGCAGGAGCTTTGTTGTGCGCGCTCCTGGGAACGCTGTGCGCGGCTG
GTTTCAGGCAGATCCGCTACTCGGTGCCGGAGGAACTGGACAAAGGCTCCTTCGTGGGCAACATCTCCAA
GGACCTAGGGCTGGAGCCCCGAGAGCTGGCGGAGCGCGGGGTCCGCATCATCTCCAGAGGTAAATCTCAG
CTTTTCTCTCTGGACCCGCGAAGCGGCAGCTTGGTCACCAGGGGCAGGATAGACCGGGAAGAGCTGTGTG
CTCAGAGCGCGCCCTGTCTCGTCAGCTTTAACATCCTTGTGGAGGATAAGCTGAAAATATTTGAGGTAGA
AGTTGACATTAGCGATATTAATGATAATGCTCCTAGTTTTCCAACGGAGGAATTGGAAATAAAAATTGGT
GAACTAACAGTTCCTGGAACCCGATTCCCACTTAAAACTGCATTTGACCCGGATGTGGGCATGAACGCCC
TGCAGAACTATAAGCTCAATTCCAATGACTATTTCTCCTTGGCTGTGAACAGCGTCATCGATGACGCCAA
GTACCCAGAGCTAGTGCTGGAGCGAGCCCTGGATCGTGAGAAAAAGGCAGTCCATCAGCTTGATCTCATT
GCCTCTGATGGCGGAGACCCTGTGCACACCAGCAAGTTGTGCATCCAGGTGATAGTCTCGGATGCAAATG
ACAACCCACCTGTGTTTACCAAGCCAGAGTACCATGTCAGTGTTTTGGAAAATGTGCCAGTGGGCACCCG
GCTGATCACAGTGAACGCCACTGATCCTGATGAGGGATTCAATGCTCAAGTGTCCTATATTCTGGATAAA
ATGCCTGGGAAAATTGCTCAGGTTTTCCATCTCAACTCAGTGACCGGAGATATATCAATATTAAAAAGTC
TTGATTATGAGGACGCTGTGTTCTATGAAATCAAAATTGAAGCACAAGACGGACCAGGTCTTTTTTCAAG
AGCCAAGGTTCTTGTAACGGTTCTGGATGTGAATGACAACGCCCCGGAAGTCTCAGTCACTTCCCTCACA
GGCTCGGTCCCAGAGGAGGCTCCCGCTGGAAGAGAAATCGCACTTATCAATGTACACGACCGAGATTCTG
GCCAGAACGGGCAAGTCACAGTTTTTGTCCTAGGAAATCTGCCCTTTACTCTAGAAAAATCAATAGACCA
ATACTACCGATTAGTGACAGCCAGATCTTTGGATCATGAGGAGGTGTCCCAATATAATATCAGTCTAAGA
GCCACGGATGGGGGAAGTCCACCATTGTCTACAGAAACTCATATCACTCTGCATGTGTCAGACATCAACG
ACAACCCTCCTACATTCACGCACGCCTCCTATTCAGCCTATATCCCAGAAAACAATGCTAGGGGAGCCTC
CATCTTCTCTGTTACAGCACAGGACCCAGACACTGACAAGAATGCACAAGTCACTTACTCACTGGCTGAG
GACACACTTCAGGGGCTGCCACTGTCATCCTACATCTCCATCAACTCCAACACTGGTGTCCTGTATGCTC
TTTGCTCCTTTGACTATGAGCAGTTTAGAGACCTGCAATTACAAATAACAGCTAGAGACAGTGGGACCCC
TCCACTGAGCAGCAACACAACACTGAACCTATTTGTGCTGGACCAGAATGACAACACACCTGAGATCCTG
TATCCGACCCTCCCAGTAGACGGTTCCACAGGGGTTGAGTTGGCACCCCGCTCTGCAGATCCTGGATACC
TGGTGACCAAAGTGGTGGCAGTAGACAAAGACTCAGGACAGAACGCCTGGCTGTCCTACCGCCTGCTCAA
GGCCAGTGAGCCAGGGCTCTTCTCAGTAGGGCTGCACACAGGAGAGGTACGCACTGCTCGGGCCCTGCTG
GACAGAGATGCTCTCAAGCAGAGCCTGGTGGTGGCCGTGCAGGACCACGGCCAGCCTCCTCTCTCCGCCA
CTGTCACGCTCACCATAGCAGTGGCTGACAGCATTCCTGACATCCTGGGGGACCTGGAAAGCATCCATAC
CCCTGCTAACCCCCAAAATTCAGACCTGACACTCTACCTGGTGGTGGCAGTGGCTGTGGTCTCCTGCATC
TTCCTGGCCTTTGTCATTGTGCTGCTGGCCCTTAGGCTTCGACGTTGGTACTCATCACGCCTACAGGCTT
CAGGAAATGGATTGGCTGGCATACCAGCCTCTCACTTTGTGGGTCTAGATGGGGTGCAAGCTTTCCTGCA
GACCTACTCCCAGGAAGTTTCACTTACCGCAGGCTCTCGGAAGAGTCACCTGATCTTCCCACAACCCAAC
TACGCAGACACGCTCATCAGCCAGGAGAGCTGTGGGAAAAGCGAGCCTCTTATAATACCTCAAGATTTAC
TTGAAACGAAAGAAGACCCCACGCTGCCTCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGC
CCAGAGACCCGGCACGAGCGGATCCCAAAATGGTGATGAAACTGGCACCTGGCCCAACAACCAGTTTGAT
ACAGAGATGCTGCAAGCCATGATCTTGGCCTCTGCCAGCGAAGCTGCTGATGGGAGCTCTACCCTGGGAG
GGGGCGCTGGCACCATGGGTCTGAGCGCTCGATACGGACCCCAGTTTACCCTGCAGCACGTGCCTGACTA
CCGCCAGAACGTGTACATCCCTGGCAGCAATGCCACGCTGACCAATGCCGCTGGCAAACGAGATGGCAAG
GCTCCAGCAGGTGGTAATGGCAACAAGAAGAAATCGGGCAAGAAAGAGAAGAAGTAA

Translation (928 aa):
MIRLGQGTAGALLCALLGTLCAAGFRQIRYSVPEELDKGSFVGNISKDLGLEPRELAERGVRIISRGKSQ
LFSLDPRSGSLVTRGRIDREELCAQSAPCLVSFNILVEDKLKIFEVEVDISDINDNAPSFPTEELEIKIG
ELTVPGTRFPLKTAFDPDVGMNALQNYKLNSNDYFSLAVNSVIDDAKYPELVLERALDREKKAVHQLDLI
ASDGGDPVHTSKLCIQVIVSDANDNPPVFTKPEYHVSVLENVPVGTRLITVNATDPDEGFNAQVSYILDK
MPGKIAQVFHLNSVTGDISILKSLDYEDAVFYEIKIEAQDGPGLFSRAKVLVTVLDVNDNAPEVSVTSLT
GSVPEEAPAGREIALINVHDRDSGQNGQVTVFVLGNLPFTLEKSIDQYYRLVTARSLDHEEVSQYNISLR
ATDGGSPPLSTETHITLHVSDINDNPPTFTHASYSAYIPENNARGASIFSVTAQDPDTDKNAQVTYSLAE
DTLQGLPLSSYISINSNTGVLYALCSFDYEQFRDLQLQITARDSGTPPLSSNTTLNLFVLDQNDNTPEIL
YPTLPVDGSTGVELAPRSADPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTARALL
DRDALKQSLVVAVQDHGQPPLSATVTLTIAVADSIPDILGDLESIHTPANPQNSDLTLYLVVAVAVVSCI
FLAFVIVLLALRLRRWYSSRLQASGNGLAGIPASHFVGLDGVQAFLQTYSQEVSLTAGSRKSHLIFPQPN
YADTLISQESCGKSEPLIIPQDLLETKEDPTLPQQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPNNQFD
TEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGK
APAGGNGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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