NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS89159.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89159.1 Public Mus musculus 17 Cyp1b1 23 108 98 CCDS HistoryNCBI Gene:13078Re-query CCDS DB by CCDS ID:89159.1Re-query CCDS DB by GeneID:13078See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89159.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000234361.1 ENSMUSP00000157049.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234361.1Link to Ensembl Protein Viewer:ENSMUSP00000157049.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234361Re-query CCDS DB by Protein ID:ENSMUSP00000157049
Original member Current member NCBI NM_001364889.1 NP_001351818.1 Accepted alive Link to Nucleotide Sequence:NM_001364889.1Link to Protein Sequence:NP_001351818.1Re-query CCDS DB by Nucleotide ID:NM_001364889Re-query CCDS DB by Protein ID:NP_001351818Link to BLAST:NP_001351818.1

Chromosomal Locations for CCDS 89159.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 79708452 79708501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79710311 79710681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79713269 79714311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGGCCACCAGCCTTAGTGCAGACAGTCCACAGCAGCTGAGCTCGCTGTCTACCCAGCAGACCACTCTTC
TGCTACTCTTCTCCGTCCTGGCCGCCGTGCACTTAGGCCAGTGGCTGCTGCGACAGTGGCAACGGAAACC
GTGGTCCTCGCCCCCAGGTCCCTTTCCTTGGCCACTGATCGGAAACGCGGCGGCTGTTGGCCAGGCGTCG
CACTTGTACTTCGCTCGCCTTGCAAGGCGCTATGGCGACGTTTTCCAGATCCGTCTGGGCAGCTGTCCCG
TGGTGGTGCTGAATGGAGAGAGTGCCATCCACCAGGCCCTGGTGCAGCAGGGCAGCATCTTCGCGGACCG
GCCGCCCTTCGCCTCTTTCCGTGTGGTGTCTGGTGGCCGCAGTCTGGCGTTCGGTCACTACTCTGAGCAC
TGGAAGACGCAGCGACGCTCGGCCTATAGCACGATGCGTGCTTTCTCCACGCGCCACCCGCGCAGTCGCG
GTCTTCTCGAGGGCCACGCGCTGGCAGAGGCTCGAGAATTGGTGGCAGTGCTGGTGCGGCGCTGTGCGGG
CGGCGCCTTCCTCGATCCAACGCAGCCGGTCATTGTGGCGGTGGCCAACGTCATGAGCGCTGTGTGCTTC
GGCTGTCGGTACAACCACGACGATGCGGAGTTCCTAGAGCTGCTCAGCCACAATGAGGAGTTCGGGCGCA
CAGTGGGTGCGGGCAGCCTGGTGGATGTGCTGCCCTGGCTGCAGCTATTTCCCAACCCGGTGCGCACCAC
CTTCCGCAAGTTCGAGCAGCTCAACCGCAACTTCAGCAACTTCGTTCTGGACAAGTTCCTGAGGCACCGC
GAAAGCCTGGTGCCCGGGGCTGCTCCTCGAGACATGACGGACGCCTTCATCCTCTCTGCCGAAAAGAAAG
CGTCTGGGGCCCCTGGCGACGATTCCTCCGGGCTGGACTTGGAGGATGTGCCTGCCACTATTACGGACAT
CTTCGGAGCCAGCCAGGACACCCTTTCCACCGCGCTGCTGTGGCTGCTCATCCTCTTTACCAGATACCCG
GATGTTCAGGCCCGCGTGCAGGCTGAGTTGGACCAGGTTGTGGGGAGGGACCGCCTGCCCTGCATGAGTG
ACCAGCCCAACCTGCCATATGTCATGGCTTTTCTTTATGAATCAATGCGATTCTCCAGCTTTTTGCCTGT
CACCATTCCACACGCCACCACCGCCAACACCTTTGTTTTAGGTTACTACATCCCCAAGAATACGGTCGTT
TTTGTTAACCAGTGGTCTGTGAATCATGACCCAGCCAAGTGGCCTAACCCAGAGGACTTTGATCCAGCCC
GCTTCCTGGACAAGGACGGCTTCATTAACAAGGCGCTAGCCAGCAGTGTGATGATATTCTCAGTGGGCAA
ACGGAGGTGCATCGGATGGCACACCACGATGAGCAGCCACTTCCTGGAAGCTGAGAGAGGTTAG

Translation (487 aa):
MATSLSADSPQQLSSLSTQQTTLLLLFSVLAAVHLGQWLLRQWQRKPWSSPPGPFPWPLIGNAAAVGQAS
HLYFARLARRYGDVFQIRLGSCPVVVLNGESAIHQALVQQGSIFADRPPFASFRVVSGGRSLAFGHYSEH
WKTQRRSAYSTMRAFSTRHPRSRGLLEGHALAEARELVAVLVRRCAGGAFLDPTQPVIVAVANVMSAVCF
GCRYNHDDAEFLELLSHNEEFGRTVGAGSLVDVLPWLQLFPNPVRTTFRKFEQLNRNFSNFVLDKFLRHR
ESLVPGAAPRDMTDAFILSAEKKASGAPGDDSSGLDLEDVPATITDIFGASQDTLSTALLWLLILFTRYP
DVQARVQAELDQVVGRDRLPCMSDQPNLPYVMAFLYESMRFSSFLPVTIPHATTANTFVLGYYIPKNTVV
FVNQWSVNHDPAKWPNPEDFDPARFLDKDGFINKALASSVMIFSVGKRRCIGWHTTMSSHFLEAERG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH