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Report for CCDS50172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50172.1 Public Mus musculus 17 Dlgap1 23 108 98 CCDS HistoryNCBI Gene:224997Re-query CCDS DB by CCDS ID:50172.1Re-query CCDS DB by GeneID:224997See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50172.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000148486.7 ENSMUSP00000122337.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000148486.7Link to Ensembl Protein Viewer:ENSMUSP00000122337.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000148486Re-query CCDS DB by Protein ID:ENSMUSP00000122337
Original member Current member NCBI NM_001128180.1 NP_001121652.1 Accepted alive Link to Nucleotide Sequence:NM_001128180.1Link to Protein Sequence:NP_001121652.1Re-query CCDS DB by Nucleotide ID:NM_001128180Re-query CCDS DB by Protein ID:NP_001121652Link to BLAST:NP_001121652.1

Chromosomal Locations for CCDS 50172.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 70522188 70522262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70593167 70593381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70657454 70657631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70662569 70662809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70761075 70761445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70765998 70766089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70786788 70787209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70809188 70809279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70815194 70815346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70818025 70818234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2049 nt):
ATGATCGACCTTTTTAAGGCTGAGTGGGTTTCTTCAGTTTGCGTGCAAGTTTCCCGAAATGGAAGGACTG
ACCAGGTTCCCCAGGATGAATGGTCAGGGTACACACCTCGCGGGAAAGACGACGAGATCCCGTGCCGGAG
GATGCGCAGTGGTAGCTACATCAAAGCCATGGGGGATGAAGACAGTGGGGACTCGGACACGAGCCCCAAG
CCGTCTCCCAAGGTGGCTGCAAGAAGAGAAAGCTATCTCAAGGCCACGCAGCCGTCCCTTACAGAGCTCA
CCACTCTCAAGATCTCCAATGAACACTCCCCCAAACTCCAGATCCGGAGTCACAGCTACCTGAGGGCCGT
AAGTGAAGTCTCCATCAACAGAAGCCTGGACAGCCTGGACCCTGCAGGCTTGCTCACGTCACCAAAGTTC
CGCTCCAGAAACGAGAGCTACATGCGCGCCATGAGCACCATAAGTCAGGTGAGCGAGATGGAGGTGAACG
GCCAGTTCGAATCCGTGTGCGAGTCTGTGTTCAGCGAGCTGGAGTCGCAGGCGGTGGAAGCGCTGGACCT
GCCCCTGCCTGGCTGCTTCCGCATGCGGAGCCACAGCTATGTGCGGGCCATCGAAAAGGGCTGCTCCCAG
GACGACGAATGCGTGTCGCTGCGGTCGTCCTCCCCTCCACGCACAACCACCACCGTGAGGACCATCCAGA
GCAGCACCGTGTCATCTTGCATTACAACATATAAGAAGACACCACCTCCAGTCCCACCCAGAACTACCAC
GAAACCTTTCATTTCTATCACAGCCCAGAGTAGCACAGAGTCTGCGCAGGATGCCTACATGGACGGGCAA
GGCCAGCGCGGAGACATGATCAGCCAGTCTGGCCTCAGCAACTCCACCGAAAGTCTGGACAGTATGAAGG
CTCTCACGGCTGCCATCGAGGCTGCAAACGCCCAGATTCACGGCCCAGCAAGTCAACATATGGGCAGCAA
TGCTGCTGCTGTCACCACCACCACCACCATAGCCACTGTCACCACCGAGGATAGGAAGAAAGACTTTAAG
AAAAACCGATGTCTGTCTATTGGGATACAGGTGGACGATGCCGAAGAGCCGGAGAAAATGGCAGAGAGTA
AGACGTCCAATAAGTTCCAGTCCGTGGGAGTGCAAGTAGAAGAAGAGAAGTGCTTCCGCAGGTTCACTCG
GTCCAACAGTGTGACAACTGCAGTACAGGCCGACCTGGACTTCCATGATAATCTGGAAAATTCTCTGGAG
TCTATAGAGGACAATTCGTGTCCTGGCCCCATGGCCAGACAGTTCTCGCGGGACGCCAGCACCTCTACCG
TCAGTATCCAGGGTTCAGGAAACCACTATCATGCCTGTGCAGCCGATGACGACTTTGACACGGATTTTGA
CCCCTCTATCCTGCCTCCTCCGGACCCCTGGATTGACTCTATCACAGAAGACCCTCTGGAGGCCGTTCAA
AGGTCCGTGTGCCACCGGGACGGCCACTGGTTCCTGAAGCTTCTCCAGGCAGAGCGGGACCGCATGGAAG
GGTGGTGCAAGCTAATGGAGAGAGAAGAGAGGGAGAACAACCTCCCAGAAGACATTCTAGGGAAAATCCG
AACCGCGGTGGGCAGTGCCCAACTTCTCATGGCGCAGAAATTCTACCAGTTCAGAGAACTGTGTGAAGAG
AACCTGAATCCCAATGCTCACCCGAGACCCACTTCCCAGGACTTGGCGGGGTTTTGGGACATGCTGCAGT
TGTCCATAGAGAATATTAGTATGAAATTTGATGAACTTCATCAGCTAAAGGCCAATAATTGGAAACAGAT
GGATCCTCTTGACAAGAAGGAGCGAAGGGCCCCTCCTCCAGTGCCAAAGAAGCCGGCGAAGGGCCCCGCG
CCGCTGATCCGGGAGCGCTCGCTGGAGAGCTCGCAGCGCCAGGAGGCCCGCAAGCGCCTGATGGCCGCCA
AGCGCGCCGCGTCGGTCCGCCAGAACTCGGCCACCGAGAGCGCCGAGAGCATCGAGATCTACATCCCCGA
GGCGCAGACCCGGCTCTGA

Translation (682 aa):
MIDLFKAEWVSSVCVQVSRNGRTDQVPQDEWSGYTPRGKDDEIPCRRMRSGSYIKAMGDEDSGDSDTSPK
PSPKVAARRESYLKATQPSLTELTTLKISNEHSPKLQIRSHSYLRAVSEVSINRSLDSLDPAGLLTSPKF
RSRNESYMRAMSTISQVSEMEVNGQFESVCESVFSELESQAVEALDLPLPGCFRMRSHSYVRAIEKGCSQ
DDECVSLRSSSPPRTTTTVRTIQSSTVSSCITTYKKTPPPVPPRTTTKPFISITAQSSTESAQDAYMDGQ
GQRGDMISQSGLSNSTESLDSMKALTAAIEAANAQIHGPASQHMGSNAAAVTTTTTIATVTTEDRKKDFK
KNRCLSIGIQVDDAEEPEKMAESKTSNKFQSVGVQVEEEKCFRRFTRSNSVTTAVQADLDFHDNLENSLE
SIEDNSCPGPMARQFSRDASTSTVSIQGSGNHYHACAADDDFDTDFDPSILPPPDPWIDSITEDPLEAVQ
RSVCHRDGHWFLKLLQAERDRMEGWCKLMEREERENNLPEDILGKIRTAVGSAQLLMAQKFYQFRELCEE
NLNPNAHPRPTSQDLAGFWDMLQLSIENISMKFDELHQLKANNWKQMDPLDKKERRAPPPVPKKPAKGPA
PLIRERSLESSQRQEARKRLMAAKRAASVRQNSATESAESIEIYIPEAQTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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