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Report for CCDS57101.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57101.1 Public Mus musculus 17 Kcnh8 23 108 98 CCDS HistoryNCBI Gene:211468Re-query CCDS DB by CCDS ID:57101.1Re-query CCDS DB by GeneID:211468See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57101.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039366.10 ENSMUSP00000049206.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039366.10Link to Ensembl Protein Viewer:ENSMUSP00000049206.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000039366Re-query CCDS DB by Protein ID:ENSMUSP00000049206
Original member Current member NCBI NM_001031811.2 NP_001026981.2 Accepted alive Link to Nucleotide Sequence:NM_001031811.2Link to Protein Sequence:NP_001026981.2Re-query CCDS DB by Nucleotide ID:NM_001031811Re-query CCDS DB by Protein ID:NP_001026981Link to BLAST:NP_001026981.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001026981.2 1102 P59111 1102 99.9093% 0 1

Chromosomal Locations for CCDS 57101.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 52602805 52602880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 52725763 52725996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 52753573 52753704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 52797419 52797546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 52803333 52803573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 52834542 52834699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 52839055 52839262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 52877869 52878066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 52893915 52894114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 52898454 52898703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 52905001 52905215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 52950330 52950368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 52956556 52956911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 52959397 52959503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 52961799 52961875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 52977623 52978312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3309 nt):
ATGCCGGTTATGAAAGGATTACTGGCGCCACAGAACACCTTCCTGGACACTATTGCCACCCGTTTCGACG
GAACACATAGCAACTTCATCCTGGCCAATGCCCAAGTGGCAAAGGGTTTCCCCATAGTCTACTGTTCAGA
TGGCTTCTGTGAGCTGGCCGGGTTTGCACGAACTGAAGTCATGCAGAAGAGCTGCAGCTGCAAGTTTTTG
TTTGGGGTGGAGACCAACGAGCAGCTGATGCTTCAGATAGAAAAGTCCCTGGAGGAGAAAGTAGAATTCA
AAGGAGAAATTATGTTCTACAAGAAGAATGGGGCTCCATTTTGGTGCCTGCTGGATATCGTTCCTATAAA
GAATGAGAAAGGAGATGTAGTCCTTTTCCTGGCCTCATTCAAAGACATAACAGACACGAAAGTGAAGATT
ACATCAGAAGATAAAAAAGAAGACAGAACCAAAGGAAGATCAAGAGCAGGGAGCCACTTTGACTCAGCCC
GGAGACGGAGCCGAGCCGTCCTTTATCACATCTCAGGACACCTTCAAAGAAGAGAAAAGAACAAATTGAA
AATAAATAATAACGTGTTTGTAGATAAACCAGCGTTTCCAGAGTATAAGGTTTCTGATGCAAAAAAGTCC
AAGTTCATCCTGCTGCATTTCAGCACTTTCAAAGCTGGCTGGGACTGGCTCATTTTGCTGGCAACGTTTT
ATGTTGCTGTGACAGTCCCTTACAATGTGTGTTTCATTGGCAATGAGGACCTGTCCACCACTCGGAGCAC
AACGGTCAGTGACATTGCAGTGGAGATACTGTTCATTATAGATATTATTCTAAATTTCCGAACAACTTAT
GTCAGCAAGTCTGGCCAAGTTATCTTTGAAGCGAGATCCATTTGCATTCACTACGTCACCACCTGGTTCA
TCATTGATCTGATTGCTGCCTTGCCCTTTGACCTCCTGTATGCTTTCAATGTCACAGTGGTGTCCCTCGT
TCATCTCCTGAAGACTGTTCGGCTGCTGCGTCTTTTGCGCCTCCTCCAGAAGCTGGACCGTTATTCTCAG
CACAGTACCATCGTCCTCACCCTGCTCATGTCCATGTTTGCTCTCCTTGCACACTGGATGGCATGTATCT
GGTATGTCATTGGAAAAATGGAGAGGGAGGACAACAGCCTTCTCAAGTGGGAAGTCGGTTGGCTTCATGA
GCTGGGGAAGAGACTGGAATCTCCATATTATGGCAACAACACGCTGGGGGGCCCATCCATCCGAAGTGCC
TATATTGCGGCCCTGTACTTCACTCTCAGCAGCCTCACAAGCGTTGGGTTTGGGAATGTGTCTGCTAACA
CAGATGCAGAGAAGATCTTCTCCATCTGCACCATGCTGATTGGAGCCCTGATGCATGCCTTAGTATTTGG
GAACGTGACTGCCATCATACAGAGAATGTACTCTAGATGGAGCCTGTACCACACTAGAACCAAGGACCTA
AAAGACTTCATCCGTGTGCACCACCTGCCCCAGCAACTCAAGCAGAGGATGCTCGAGTACTTTCAGACAA
CTTGGTCAGTCAACAATGGGATAGATTCAAATGAGCTTTTAAAAGACTTTCCAGATGAGCTGCGCTCTGA
CATCACAATGCATCTGAACAAGGAGATCTTACAGCTGTCCCTGTTCGAATGTGCCAGCCGGGGCTGCCTC
AGGTCTCTGTCTCTCCATATTAAAACCTCCTTTTGTGCTCCAGGAGAGTATCTGCTGCGCCAGGGGGATG
CTTTGCAGGCCATCTACTTCGTGTGCTCAGGCTCTATGGAAGTTCTTAAAGACAGCATGGTGTTGGCTAT
TCTAGGGAAGGGAGATTTAATTGGAGCAAATTTATCAATTAAAGACCAAGTGATCAAGACCAACGCTGAT
GTGAAGGCGCTGACCTACTGTGATCTACAGTGCATCATCCTGAAAGGTCTCTTTGAGGTGCTGGGCCTTT
ACCCAGAGTATGCACACAAATTCGTAGAAGACATCCAGCACGACCTCACATACAACCTTCGAGAAGGTCA
TGAGAGTGATGTAATATCAAGATTATCGAACAAATCTACAGTCTCACAGGCAGAGCCCAAGGGGAATGGA
AGCATCAACAAGAGACTCCCATCCATTGTGGAAGATGAGGAGGAAGAAGAGGTTGAGGAAGAGGAGACGA
CCTCCCTTTCTCCTATCTACACAAGGGGATCCTCTGTCTCACATAGCAAAAAGACTGGAAGCAATAAGAC
CTATCTAGGCTTGAGCTTAAAGCAACTGGCCTCAGGAACGGTACCATTCCACTCACCTATCAGAGTCTCC
AGTGCCAACTCCCCTAAAACCAAGCAGGAAGCTGACCCACCTAACCATGGTAGAAAGAAAGAGAAGAACC
TGAAAGTGCAGCTTTCCAGCCTGGGTAGTGCTGGAACCCCAGAGCTTAGTCCAAGGATTGTTGATGGAAT
TGAAGATGGTAACAGCAATGAGGAAACTCAGACTTTTGACTTTGGCTCTGAACAGATCAGGCCAGAGCCC
AGGATTTCCCCTCCCCTTGCAGAATCCGAGATCGGAGCTGCGTTTCTGTTCATCAAGGCTGAAGAAACCA
AGCAGCAGATTAACAAGCTCAACAGTGAGGTCACAACATTAACTCAGGAGGTTTCCCAGCTAGGGAGAGA
TATGAGAAGCATCATGCAACTTCTGGAAAACATCTTGTCACCTCAGCAGCCATCCCAGTTTTGTTCTCTA
CATCCCACCCCAATGTGTCCTTCCAGAGAAAGTTTACAGACTAGGGTGAGTTGGAGTGCTCACCAGCCTT
GCCTACATTTGCAGGCAGGTGGAGCACATCTTTACCATGGTAATGTCGCCTCTGGTATCTGGAGTGTTGA
TCCATCCTTGGTGGGCAGCAGCCCTCAACGAACTGAAGCTCACGAGCAAAACCCAGCAGACAGTGAACTT
CATCATTCTCCAAACCTGGATTATTCTCCATCCCACTGCCAGGTTATCCAAGAAGGCCACTTGCAGTTCC
TGAGGTGCATCTCCCCCCATTCAGATACCACACTGACACCTTTGCAGTCCATCTCTGCCACTCTCTCATC
TTCTGTGTGCTCCTCATCAGAAACATCCTTGCACCTGGTTCTCCCAAGTAGGTCAGAGGAGGGCAGCATC
ACTCACGGACCGGTGAGTTCTTTCAGTTTGGAAAACTTACCAGGCTCTTGGGACCGAGAACAAATGATGT
CAGCCTCTTCAGAACGCTTGGAGAACTTTCCAGTAGAAGTTGTCACAAGCACAGCGGATGTAAAGGACAG
CAAAGCCATAAACGTATAA

Translation (1102 aa):
MPVMKGLLAPQNTFLDTIATRFDGTHSNFILANAQVAKGFPIVYCSDGFCELAGFARTEVMQKSCSCKFL
FGVETNEQLMLQIEKSLEEKVEFKGEIMFYKKNGAPFWCLLDIVPIKNEKGDVVLFLASFKDITDTKVKI
TSEDKKEDRTKGRSRAGSHFDSARRRSRAVLYHISGHLQRREKNKLKINNNVFVDKPAFPEYKVSDAKKS
KFILLHFSTFKAGWDWLILLATFYVAVTVPYNVCFIGNEDLSTTRSTTVSDIAVEILFIIDIILNFRTTY
VSKSGQVIFEARSICIHYVTTWFIIDLIAALPFDLLYAFNVTVVSLVHLLKTVRLLRLLRLLQKLDRYSQ
HSTIVLTLLMSMFALLAHWMACIWYVIGKMEREDNSLLKWEVGWLHELGKRLESPYYGNNTLGGPSIRSA
YIAALYFTLSSLTSVGFGNVSANTDAEKIFSICTMLIGALMHALVFGNVTAIIQRMYSRWSLYHTRTKDL
KDFIRVHHLPQQLKQRMLEYFQTTWSVNNGIDSNELLKDFPDELRSDITMHLNKEILQLSLFECASRGCL
RSLSLHIKTSFCAPGEYLLRQGDALQAIYFVCSGSMEVLKDSMVLAILGKGDLIGANLSIKDQVIKTNAD
VKALTYCDLQCIILKGLFEVLGLYPEYAHKFVEDIQHDLTYNLREGHESDVISRLSNKSTVSQAEPKGNG
SINKRLPSIVEDEEEEEVEEEETTSLSPIYTRGSSVSHSKKTGSNKTYLGLSLKQLASGTVPFHSPIRVS
SANSPKTKQEADPPNHGRKKEKNLKVQLSSLGSAGTPELSPRIVDGIEDGNSNEETQTFDFGSEQIRPEP
RISPPLAESEIGAAFLFIKAEETKQQINKLNSEVTTLTQEVSQLGRDMRSIMQLLENILSPQQPSQFCSL
HPTPMCPSRESLQTRVSWSAHQPCLHLQAGGAHLYHGNVASGIWSVDPSLVGSSPQRTEAHEQNPADSEL
HHSPNLDYSPSHCQVIQEGHLQFLRCISPHSDTTLTPLQSISATLSSSVCSSSETSLHLVLPSRSEEGSI
THGPVSSFSLENLPGSWDREQMMSASSERLENFPVEVVTSTADVKDSKAINV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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