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Report for CCDS28618.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28618.1 Public Mus musculus 17 Cyp4f39 23 108 98 CCDS HistoryNCBI Gene:320997Re-query CCDS DB by CCDS ID:28618.1Re-query CCDS DB by GeneID:320997See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28618.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003413.6 ENSMUSP00000003413.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003413.6Link to Ensembl Protein Viewer:ENSMUSP00000003413.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000003413Re-query CCDS DB by Protein ID:ENSMUSP00000003413
Original member Current member EBI ENSMUST00000237491.1 ENSMUSP00000158442.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237491.1Link to Ensembl Protein Viewer:ENSMUSP00000158442.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237491Re-query CCDS DB by Protein ID:ENSMUSP00000158442
Original member Current member NCBI NM_177307.3 NP_796281.1 Accepted alive Link to Nucleotide Sequence:NM_177307.3Link to Protein Sequence:NP_796281.1Re-query CCDS DB by Nucleotide ID:NM_177307Re-query CCDS DB by Protein ID:NP_796281Link to BLAST:NP_796281.1

Chromosomal Locations for CCDS 28618.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 32468462 32468683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32470804 32470948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32481074 32481127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32481780 32481907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32482087 32482211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32483205 32483472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32486770 32486836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32486946 32487075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32489620 32489753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32491143 32491207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32491807 32491889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32492302 32492479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1599 nt):
ATGCTGCCCCTCACCGACTACCTGTTGCAGCTTCTGGGGCTGGAGAAGACAGCCTTTCGAGTGTATGTTG
TGTCGGCTCTGCTGCTATTGGTCCTTTTCTTCTTCTTCCGCCTGCTGGTGCGGGCATTCAAATTATTTAG
TGACTTCCGCATTACCTGTCGCAAGCTGAGCTGCTTCCCAGAGCCTCCAGGCCGCCACTGGCTGCTGGGT
CACATGAGCATGTATCTTCCCAATGAGAAGGGCCTTCAAAACGAGAAGAAGGTGCTGGACACCATGCACC
ACATCATCCTGGCATGGGTTGGACCTTTCTTGCCTCTCCTGGTGCTTGTTCATCCTGATTACATCAAGCC
TGTGTTGGGTGCCTCAGCTGCCATTGCACCCAAGGATGAGTTTTTCTATAGCTTCCTGAAGCCTTGGTTA
GGGGATGGACTTCTGATCAGCAAAGGGAACAAATGGAGCCGGCACCGCCGCCTGCTCACACCTGCCTTCC
ACTTTGACATCCTGAAGCCCTACATGAAGATTTTCAACCAGTGCACGAACATCATGCACGCTAAATGGCG
GCGACATCTGGCAGAGGGCTCAGTGACCTCCTTTGACATGTTCGAGCACATCAGCCTTATGACCCTGGAC
AGCCTTCAGAAATGTGTGTTCAGTTACAACAGTGACTGCCAGGAGAGAATGAGCGATTACATTTCTTCCA
TTATCGAACTGAGCGCTCTGGTGGTGCGGCGCCAATACCGCTTGCATCACTACCTGGATTTCATGTACTA
CCTCACAGCCGATGGGAGGCGCTTCCGTCAGGCCTGCGACACGGTGCACAACTTCACCACTGAAGTCATA
CAGGAGCGGCGGCAGGCGCTGCGCCAGCAGGGCGCCGAGGCATGGCTGAAAGCCAAGCAGGGCAAGACCT
TGGACTTCATAGATGTGCTGTTGCTGGCCAAGGATGAAGAGGGGAAAGAATTATCTGACGAGGACATCCG
GGCCGAGGCAGATACTTTCATGTTTGAAGGTCATGACACAACATCTAGTGGGCTGTCCTGGGCACTGTTC
AACCTGGCAAAGTATCCAGAGTACCAGGAGAAGTGCCGGGAGGAGATCCAAGAAGTCATGAAAGGCAGAG
AGCTGGAAGAGCTGGACTGGGATGACCTCACTCAGTTGCCCTTCACCACCATGTGTATCAAGGAGAGCCT
TCGCCAGTTCCCACCTGTGACCCTCATCTCTCGTCGCTGCACAGAGGACATCAAGCTGCCAGATGGACGT
GTCATCCCCAAAGGAATTATCTGCTTGGTCAGCATCTACGGGACCCACCACAACCCCATAGTGTGGCCTG
ACTCTAAGGTATACAATCCTTACCGTTTTGACCCGGACACCCCACAGCAGCGCTCTCCACTGGCCTTTGT
ACCTTTCTCAGCAGGTCCCAGGAATTGCATCGGGCAGAGCTTCGCCATGGCAGAGATGCGTGTAGTCGTG
GCGCTGACACTGCTGCGCTTCCGCCTGAGCGTGGACCGAACCCACAAGGTGCGGAGGAAGCCGGAGCTTA
TTCTACGCACGGAGAACGGCCTTTGGCTCAATGTAGAGCCTCTACCCTCACGGGCCTGA

Translation (532 aa):
MLPLTDYLLQLLGLEKTAFRVYVVSALLLLVLFFFFRLLVRAFKLFSDFRITCRKLSCFPEPPGRHWLLG
HMSMYLPNEKGLQNEKKVLDTMHHIILAWVGPFLPLLVLVHPDYIKPVLGASAAIAPKDEFFYSFLKPWL
GDGLLISKGNKWSRHRRLLTPAFHFDILKPYMKIFNQCTNIMHAKWRRHLAEGSVTSFDMFEHISLMTLD
SLQKCVFSYNSDCQERMSDYISSIIELSALVVRRQYRLHHYLDFMYYLTADGRRFRQACDTVHNFTTEVI
QERRQALRQQGAEAWLKAKQGKTLDFIDVLLLAKDEEGKELSDEDIRAEADTFMFEGHDTTSSGLSWALF
NLAKYPEYQEKCREEIQEVMKGRELEELDWDDLTQLPFTTMCIKESLRQFPPVTLISRRCTEDIKLPDGR
VIPKGIICLVSIYGTHHNPIVWPDSKVYNPYRFDPDTPQQRSPLAFVPFSAGPRNCIGQSFAMAEMRVVV
ALTLLRFRLSVDRTHKVRRKPELILRTENGLWLNVEPLPSRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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