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Report for CCDS27564.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27564.1 Public Mus musculus 15 Spatc1 23 108 98 CCDS HistoryNCBI Gene:74281Re-query CCDS DB by CCDS ID:27564.1Re-query CCDS DB by GeneID:74281See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27564.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074173.3 ENSMUSP00000073805.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074173.3Link to Ensembl Protein Viewer:ENSMUSP00000073805.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000074173Re-query CCDS DB by Protein ID:ENSMUSP00000073805
Original member Current member NCBI NM_028852.1 NP_083128.1 Accepted alive Link to Nucleotide Sequence:NM_028852.1Link to Protein Sequence:NP_083128.1Re-query CCDS DB by Nucleotide ID:NM_028852Re-query CCDS DB by Protein ID:NP_083128Link to BLAST:NP_083128.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083128.1 480 Q148B6-1 480 99.7917% 0 1

Chromosomal Locations for CCDS 27564.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 76268172 76268376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76283548 76284204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76284695 76284805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76284915 76285054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76292164 76292493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGTCTCTACTTACAAGTTACGAGGGGCTTCGGCATCAGATAGAGAGGCTGGTGCGGGAAAATGAGGAAC
TGAAGAAGCTGGTACGGCTCATTCGGGAGAATCAGGAGCTCAAGTCTGCGATCAAGACTCAGGCAGGTGG
CCTCTGCATCAGCGGGTTCACCGGAGGGCTTGGTGAGGCAGCGGCAGGCCCTCCCCAACATCAGGGTGTA
TTCCTGCCCCCAGCTTCAGCAGCAGCAAAGGAGCCCTGCTCAGAAGACTTGGGGATGGTAGCACTGGCAC
CTCTGGCTGACATGTTGAATACCCCACAGCTCAGTCCTGCAGCAGGCTCCCTTGTGAACCCCCTGGCTGC
TACTCTTAACCCACTGCTGTCTGGCCAAATACCCTTGTTGCAGAACAACCAGTTTGCCAATCTTGTGCCA
TGCTCCATGAGCAACCAACTGACCAATCCTACTACAGTTTCCCCAGGAGTCACCTTGGCCAGTTCTCTGG
GTTTGCCCTCTACTGGACCCCTGAACAGTCAAATGACTAGTCCCATGACTGTACCCCCAGGGACCACTCT
GGCCAGCTCACTGGGCCTGACCTCAACTGGTTCCCTAACAACAAGCAGCCGGCTGGTGGGCCCTCTGGCT
GTATCTCAGAGCAGCCCCATCATGGCTCCCCTGGCAGGCACAGTGGCAGTCTCTCTGAGTAGTCCCCTGC
TCTCCTCCACAGCTACCCCTCTAGGTGTTGCTCAGAACGTAGTGCCCAACCCCATAAACAACATAGGGCA
GCCAGAGACGCCAAGGGTGCGGCTGGCAGAGCCTACCCGAGGAAACTTTTCTGGAACCTCAGCCTATGCA
GGACCAGCTCCCACCTCCAAAGTCAATGATACCCGGGGTTCACGCGTGATGGAACAGTCTCGGAAGAATG
TCGTGGAGATGGAGCGGAAGACGCCCCACCGAAAGTCTAACAAGTTACCTGACAATCCCCGAGACACAAA
ACAGCTAGTCTGTGAGAGGCTAGTGGGGGAAATCGCCTTCCAGCTAGACCGAAGAATCCTGTCCAGCATC
TTCCCAGAGCGCGTACGTCTCTACGGCTTCACTGTCTCCAACATCCCAGAGAAGATCATCCAGGCCTCCC
TAAACCCCAGTAATCACAAGTTGGATGAGGACCTGTGCCAGACGCTCACACAGCGTTACGTGAGCATCAT
GAACAAGCTGCAGAGCTTAGGCTACAACGGGCGGGTGCACCCGGCACTGACAGAACAGCTGGTCAATGAG
TACGGCATCCTGCGCGAGCGGCCTGAGCTGGCGGCATCTGAAGGTGGCTGCTACACGGTGGACTTCTTGC
AGCGTGTGCTATTGGAAACCGTGCACCCCAGCAAGCTCACGGACGCCCTCCTGCTGCTCTCCTGCCTCCA
TCAGCTGTCCCACGATGACGGCAAACCTATGTTCATCTGGTAA

Translation (480 aa):
MSLLTSYEGLRHQIERLVRENEELKKLVRLIRENQELKSAIKTQAGGLCISGFTGGLGEAAAGPPQHQGV
FLPPASAAAKEPCSEDLGMVALAPLADMLNTPQLSPAAGSLVNPLAATLNPLLSGQIPLLQNNQFANLVP
CSMSNQLTNPTTVSPGVTLASSLGLPSTGPLNSQMTSPMTVPPGTTLASSLGLTSTGSLTTSSRLVGPLA
VSQSSPIMAPLAGTVAVSLSSPLLSSTATPLGVAQNVVPNPINNIGQPETPRVRLAEPTRGNFSGTSAYA
GPAPTSKVNDTRGSRVMEQSRKNVVEMERKTPHRKSNKLPDNPRDTKQLVCERLVGEIAFQLDRRILSSI
FPERVRLYGFTVSNIPEKIIQASLNPSNHKLDEDLCQTLTQRYVSIMNKLQSLGYNGRVHPALTEQLVNE
YGILRERPELAASEGGCYTVDFLQRVLLETVHPSKLTDALLLLSCLHQLSHDDGKPMFIW


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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