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Report for CCDS88775.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88775.1 Public Mus musculus 15 Trappc9 23 108 98 CCDS HistoryNCBI Gene:76510Re-query CCDS DB by CCDS ID:88775.1Re-query CCDS DB by GeneID:76510See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88775.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000228960.1 ENSMUSP00000155105.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228960.1Link to Ensembl Protein Viewer:ENSMUSP00000155105.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228960Re-query CCDS DB by Protein ID:ENSMUSP00000155105
Original member Current member NCBI NM_001164643.1 NP_001158115.1 Accepted alive Link to Nucleotide Sequence:NM_001164643.1Link to Protein Sequence:NP_001158115.1Re-query CCDS DB by Nucleotide ID:NM_001164643Re-query CCDS DB by Protein ID:NP_001158115Link to BLAST:NP_001158115.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158115.1 494 Q3U0M1-5 494 100% 0 0

Chromosomal Locations for CCDS 88775.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 72994912 72994928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 72999972 73000115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73012806 73013022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73025962 73026087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73031522 73031643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73050595 73050723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73052162 73052307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73057922 73058505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1485 nt):
ATGAGCGTCCCCGACTACATGCAGTGCGCAGAGGATCACCAGACCCTTCTGGTGGTCGTCCAGGCCGTGG
GCATCGTCTCTGAGGAGAACTTCTTCAGGATCTACAAGCGGATCTGCTCCGTGAGCCAGCTCAGTGTGCG
CGACACGCAGCGTGCCCTCTTCATCCGCTATCGGCACCACTACCCGCCCGAGAACAACGAGTGGGGCGAC
TTCCAGACGCACCGCAAGGTGGTAGGCCTCATCACCATCACCGATTGCTTCTCGCCCAAAGACTGGCCAC
AGACCTTCGAGAAGTTCCACGTGCAGAAGGAGATCTACGGTTCCACGCTCTACGATTCCCGCCTCTTCGT
GTTCGGGCTGCAGGGTGATGTGGCTGAGCAGCCGCGCCCGGATGTGGCCTTCTATCCCAACTACGATGAC
TGCGATTCAGTGGAGAAGCGCATCGAAGACTTCATCGAGTCCCTTTTCATTGTGTTGGAGTCCAAGCGCC
TGGACAGAGCCACCGACAAATCCGGGGACAAGATCCCTCTTCTCTGTGTCCCCTTCGAGAAGAAGGACTT
CGTGGGACTAGACACGGATAGCAGACACTACAAGAAGCGGTGCCAAGGACGCATGCGGAAACACGTTGGG
GACTTGTGCCTCCAGGCTGGGATGCTGCAGGACGCCCTGGTACACTACCACATGTCCGTGGAGCTCCTGC
GCTCAGTGAATGACTTCCTGTGGTTAGGGGCTGCCCTGGAGGGGTTGTGCTCGGCTTCAGTCATTTATCA
TTATCCCGGAGGAACTGGTGGCAAGACTGGGGCTCGGAGACTCCAAGGCAGCTCACTTCCCTCAGAAGCA
GCCAACAGACACCGGCCAGGTGCTCTCACCACCAACGGCATAAATCCTGACACCAGCACTGAGATCGGAA
GGGCCAAGAATTGCCTCAGCCCCGAGGACATCATTGACAAATACAAAGAGGCCATCTCCTATTACAGCAA
GTACAAGAACGCCGGAGTGATTGAGCTGGAAGCCTGTGTCAAGGCCGTGCGCGTCCTAGCGATTCAGAAG
CGTGGCATGGAGGCTTCGGAGTTTCTTCAGAATGCTGTGTACATCAATCTCCGGCAGCTTTCGGAAGAAG
AGAAAATCCAGCGCTACAGCATCCTGTCTGAGCTCTACGAGCTGATTGGCTTCCACCGCAAGTCAGCATT
CTTCAAGCGAGTGGCTGCCATGCAGTGTGTGGCGCCAAGCATTGCAGAACCTGGCTGGAGGGCCTGTTAC
AAGCTCCTTTTGGAGACGCTGCCTGGCTACAGTCTGTCGCTAGATCCCAAGGACTTCAGCAAAGGCACAC
ACCGAGGCTGGGCTGCCGTTCAGATGCGTCTGCTGCATGAGCTGGTCTATGCCTCCCGCAGGATGGGGAA
CCCCGCACTGTCCGTGCGGCACCTCTCCTTCCTCTTGCAGACCATGCTGGACTTCCTGTCTGACCAGGAA
ACACTGGCAACTTAA

Translation (494 aa):
MSVPDYMQCAEDHQTLLVVVQAVGIVSEENFFRIYKRICSVSQLSVRDTQRALFIRYRHHYPPENNEWGD
FQTHRKVVGLITITDCFSPKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGLQGDVAEQPRPDVAFYPNYDD
CDSVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCVPFEKKDFVGLDTDSRHYKKRCQGRMRKHVG
DLCLQAGMLQDALVHYHMSVELLRSVNDFLWLGAALEGLCSASVIYHYPGGTGGKTGARRLQGSSLPSEA
ANRHRPGALTTNGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACVKAVRVLAIQK
RGMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSIAEPGWRACY
KLLLETLPGYSLSLDPKDFSKGTHRGWAAVQMRLLHELVYASRRMGNPALSVRHLSFLLQTMLDFLSDQE
TLAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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