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Report for CCDS49434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49434.1 Public Mus musculus 14 Itih3 23 108 98 CCDS HistoryNCBI Gene:16426Re-query CCDS DB by CCDS ID:49434.1Re-query CCDS DB by GeneID:16426See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49434.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006697.16 ENSMUSP00000006697.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006697.16Link to Ensembl Protein Viewer:ENSMUSP00000006697.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000006697Re-query CCDS DB by Protein ID:ENSMUSP00000006697
Original member NCBI NM_008407.2 NP_032433.2 Updated not alive Link to Nucleotide Sequence:NM_008407.2Link to Protein Sequence:NP_032433.2Re-query CCDS DB by Nucleotide ID:NM_008407Re-query CCDS DB by Protein ID:NP_032433
Current member NCBI NM_008407.3 NP_032433.2 Accepted alive Link to Nucleotide Sequence:NM_008407.3Link to Protein Sequence:NP_032433.2Re-query CCDS DB by Nucleotide ID:NM_008407Re-query CCDS DB by Protein ID:NP_032433Link to BLAST:NP_032433.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032433.2 889 Q61704 889 100% 0 0

Chromosomal Locations for CCDS 49434.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 30908683 30908812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30909398 30909509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30909701 30909873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30911925 30912129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30912616 30912729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30912876 30912911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30913161 30913193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30914049 30914051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30914653 30914807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30915341 30915480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30915632 30915817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30917232 30917413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30917662 30917787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30918275 30918443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30918948 30919064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30919291 30919416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30920663 30920776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30921280 30921442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30921662 30921766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30921870 30922036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30922820 30922840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30923457 30923549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2670 nt):
ATGAGGACTATGTGGTGGCCCTGCCTTGTCTTGGCTCTGCTCTCTGGCTTGGAGACCTCTGGCTTTCCGA
GAAGTCCCCTCCAGCTGCTTGGGAAACGGAGCCTCCCAGAGGGGGTGGTGGATGGCATTGAGGTTTACAG
CACCAAGATCAGCTGCAAGGTGACCTCCCGCTTTGCTCACAATGTTGTCACCACAAGGGCTGTCAACCGT
GCAGACACAGCCAAGGAGGTGTCCTTTGATGTGGAACTGCCCAAGACAGCCTTCATCACCAACTTCACCT
TGACCATTGATGGTGTCACCTACCCCGGGAACGTCAAGGAGAAGGAAGTTGCCCAGAAACAATATGAAAA
GGCTGTGTCCCAGGGCAAGACAGCCGGTTTGGTCAAGGCCTCTGGGAGGAAACTGGAGAAATTCACAGTG
TCTGTCAACGTGGCTGCAGGCAGCAAAGTCACCTTTGAGCTAACCTATGAAGAACTGCTCAAGAGAAACA
AGGGCAAGTACGAGATGTACCTTAAGGTCCAGCCCAAACAACTGGTCAGACACTTTGAGATTGATGCACA
CATCTTCGAGCCACAGGGCATTAGCATGCTAGATGCTGAAGCCTCATTCATCACTAATGACCTCCTGGGA
AGCGCCCTCACCAAGTCCTTCTCAGGCAAGAAGGGGCACGTGTCTTTCAAGCCCAGCTTAGACCAGCAGC
GTTCATGCCCGACCTGTACAGACTCCCTCCTCAACGGGGACTTCACCATTGTCTACGATGTGAACAGAGA
GTCTCCAGGGAATGTGCAGATAGTCAATGGCTACTTTGTGCACTTCTTTGCACCCCAAGGCCTTCCAGTG
GTGCCTAAGAACATAGTCTTTGTGATTGATGTCAGCGGCTCCATGTCTGGTCGGAAAATCCAGCAGACCA
GGGAAGCCCTTCTTAAAATCCTGGATGACGTGAAAGAAGATGACTACCTGAATTTCATTCTCTTCAGCAC
CGATGTGACCACCTGGAAAGATCACCTAGTTCAAGCCACCCCTGCAAACCTCAAGGAGGCCAAGACATTT
GTGAAGAACATCCATGATCAAAGCATGACCAACATCAATGATGGGCTGCTGAAGGGTATTGAAATGCTGA
ACAAGGCCCGAGAGGACCACACTGTCCCAGAGAGGAGCACCTCCATCATCATCATGTTGACAGACGGGGA
TGCCAATACTGGCGAGAGCAGACCAGAAAAGATCCAGGAAAACGTCCGGAATGCCATCGGGGGCAAGTTC
CCTTTGTATAACCTGGGTTTTGGCAACAATCTGAATTATAATTTCCTGGAGACTCTGGCCCTGGAGAACC
ATGGGCTTGCCCGGCGCATTTATGAAGATTCTGATGCCAACTTGCAGCTGCAGGGCTTCTATGAAGAGGT
AGCTAATCCACTGCTGACTAATGTGGAGGTGGAATACCCCGAGAACGCCATCCTAGACCTCACCAGGAAC
AGTTACCCCCACTTCTACGATGGCTCTGAGATTGTTGTAGCAGGGCGCCTGGTGGACAGGAACATGGACA
ACTTCAAAGCAGATGTGAAGGGCCATGGGGCCTTGAATGACCTGACCTTCACAGAGGAGGTAGACATGGA
GGAAATGGATGCAGCCCTGAAGGAGCAAGGCTACATTTTTGGGGACTACATTGAGCGACTCTGGGCCTAC
CTCACTATTGAGCAGCTACTGGAGAAACGCAAGAATGCCAAAGGGGATGAGAAGGAGAACATCACAGCGG
AGGCCCTGGATCTGTCCCTCAAGTACCACTTTGTAACCCCACTGACCTCCATGGTGGTGACCAAGCCTGA
GGACAATGAAGACCAGACATCCATTGCTGACAAGCCTGGGGAAGAAGCCATCGCTGAGACCACGACCATG
TCCTTCTTGACCACTCAGCAGTCCAGTCAGAGCCCCTACTATTATGTGGATGGGGACCCCCACTTTATCA
TCCAAATCCCGGGAAAAAACGACAGCATCTGCTTCAACATCGACGAGAAGCCTGGAACCGTGCTGCGCCT
GATTCAGGACCCAGTCACAGGTATCACTGTGACCGGACAGATCATCGGAGATAAGCGAAGTAACGCTTCT
TCCAGGACAGGGAAAACTTATTTTGGCAAACTGGGCATTACCAATGCTTGGATGGACTTCCGGGTTGAGG
TGACCACGGAGAAAATCATCCTAGGGACTGGGGCCGAGCTGAGCACGTTCAGTTGGCTAGACACAATCAC
GGTCACACAGACTGGGCTGTCTGTAACAATCAACAGGAAAAAGAATATGGTGGTGTCCTTTGGAGATGGG
ATTAGCTTTGTGATCATCCTACACCAGGTTTGGAAGAAACATCCAGTTCACCAGGACTTCCTAGGGTTCT
ACGTGGTGGACAGTCACCGGATGTCAGCACAGACACATGGGCTGCTGGGCCAGTTCTTCCAACCCTTTGA
CTTTAAAGTGTTTGGCATCCGCCCAGGCTCTGACCCTACAAAGCCAGATGCCACAATGGTGGTGAAGAAT
CATCGGTTGACTGTCACAAGGGGCTCCCAGAAAGATTACAGGAAGGATGCCAGTGTTGGCACCAAGGTCA
TCTGCTGGTTTGTCCATAACAATGGAGAAGGACTAATTGATGGTGTCCATACCGACTATATTGTTCCCAG
CTTGTTCTGA

Translation (889 aa):
MRTMWWPCLVLALLSGLETSGFPRSPLQLLGKRSLPEGVVDGIEVYSTKISCKVTSRFAHNVVTTRAVNR
ADTAKEVSFDVELPKTAFITNFTLTIDGVTYPGNVKEKEVAQKQYEKAVSQGKTAGLVKASGRKLEKFTV
SVNVAAGSKVTFELTYEELLKRNKGKYEMYLKVQPKQLVRHFEIDAHIFEPQGISMLDAEASFITNDLLG
SALTKSFSGKKGHVSFKPSLDQQRSCPTCTDSLLNGDFTIVYDVNRESPGNVQIVNGYFVHFFAPQGLPV
VPKNIVFVIDVSGSMSGRKIQQTREALLKILDDVKEDDYLNFILFSTDVTTWKDHLVQATPANLKEAKTF
VKNIHDQSMTNINDGLLKGIEMLNKAREDHTVPERSTSIIIMLTDGDANTGESRPEKIQENVRNAIGGKF
PLYNLGFGNNLNYNFLETLALENHGLARRIYEDSDANLQLQGFYEEVANPLLTNVEVEYPENAILDLTRN
SYPHFYDGSEIVVAGRLVDRNMDNFKADVKGHGALNDLTFTEEVDMEEMDAALKEQGYIFGDYIERLWAY
LTIEQLLEKRKNAKGDEKENITAEALDLSLKYHFVTPLTSMVVTKPEDNEDQTSIADKPGEEAIAETTTM
SFLTTQQSSQSPYYYVDGDPHFIIQIPGKNDSICFNIDEKPGTVLRLIQDPVTGITVTGQIIGDKRSNAS
SRTGKTYFGKLGITNAWMDFRVEVTTEKIILGTGAELSTFSWLDTITVTQTGLSVTINRKKNMVVSFGDG
ISFVIILHQVWKKHPVHQDFLGFYVVDSHRMSAQTHGLLGQFFQPFDFKVFGIRPGSDPTKPDATMVVKN
HRLTVTRGSQKDYRKDASVGTKVICWFVHNNGEGLIDGVHTDYIVPSLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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