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Report for CCDS88583.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88583.1 Public Mus musculus 14 Gm2237 23 108 98 CCDS HistoryNCBI Gene:100039441Re-query CCDS DB by CCDS ID:88583.1Re-query CCDS DB by GeneID:100039441See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 88583.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112595.2 ENSMUSP00000108214.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112595.2Link to Ensembl Protein Viewer:ENSMUSP00000108214.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112595Re-query CCDS DB by Protein ID:ENSMUSP00000108214
Current member NCBI NM_001374121.1 NP_001361050.1 Accepted alive Link to Nucleotide Sequence:NM_001374121.1Link to Protein Sequence:NP_001361050.1Re-query CCDS DB by Nucleotide ID:NM_001374121Re-query CCDS DB by Protein ID:NP_001361050Link to BLAST:NP_001361050.1
Current member NCBI NM_001374122.1 NP_001361051.1 Accepted alive Link to Nucleotide Sequence:NM_001374122.1Link to Protein Sequence:NP_001361051.1Re-query CCDS DB by Nucleotide ID:NM_001374122Re-query CCDS DB by Protein ID:NP_001361051Link to BLAST:NP_001361051.1

Chromosomal Locations for CCDS 88583.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 19564906 19564933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 19567485 19567667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 19568344 19568475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 19569426 19569553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (471 nt):
ATGACTAAGAAGAGATCAAAAATAAATGAACTAGAAGAACTGAAATTGGATATGAGGAAGATCAGCAATG
ACATGGAGGAAATGTGTGGAATCCTGAACCTTTACATGTATGAGGATTTGAACTACAGGATGAACACTGA
ATTCAACATCATTAAATCACAACATGAGAAGACAATGTTGGATATGAATAAAATGATCCAGTCAATAATT
GGTTCCATGCAGTACTCTAAGGAACTGATAGAAGATAACTATTCCTACAGCATTAAGGAGGACCACCTCC
TCCGTGAGTGCACTCAACTCCACGAAAACGTAAGGATATTACTGAATGAGAACAGAAGGCTGCTGGTGGA
GCAGGCTGGCCACAAGTGTCCTGTGGGGAAGAAAAGAGGTTCTCTGAGGAGGCCAGCAAGAACATCTGTG
TCCCAAGTGCCAAGGAACAGCAGTCCAGCAGAAAGCAGAACATGGCACTGA

Translation (156 aa):
MTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSII
GSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSV
SQVPRNSSPAESRTWH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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