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Report for CCDS70438.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70438.1 Public Mus musculus 13 Ripor2 23 108 98 CCDS HistoryNCBI Gene:193385Re-query CCDS DB by CCDS ID:70438.1Re-query CCDS DB by GeneID:193385See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70438.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110383.7 ENSMUSP00000106012.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110383.7Link to Ensembl Protein Viewer:ENSMUSP00000106012.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110383Re-query CCDS DB by Protein ID:ENSMUSP00000106012
Original member Current member NCBI NM_001286100.1 NP_001273029.1 Accepted alive Link to Nucleotide Sequence:NM_001286100.1Link to Protein Sequence:NP_001273029.1Re-query CCDS DB by Nucleotide ID:NM_001286100Re-query CCDS DB by Protein ID:NP_001273029Link to BLAST:NP_001273029.1

Chromosomal Locations for CCDS 70438.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 24669986 24670086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24671755 24671910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24673032 24673110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24674647 24674670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24675775 24675828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24677724 24677873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24680628 24680691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24689466 24689509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24693766 24693891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24694117 24694265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24695573 24695702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24696471 24696596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24701062 24701730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24706091 24706275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24710123 24710291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24713622 24713757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24715290 24715451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24717547 24717705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24721631 24721833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24723709 24723792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24724946 24725036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24731585 24731685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3162 nt):
ATGCTGGTGGGATCCCAGTCCTTCTCTCCTGGCGGGCCCAATGGCATCATCCGGAGCCAGTCCTTCGCAG
GTTTCAGTGGGCTGCAGGAAAGGCGGTCCAGGTGTAACTCCTTCATTGAAAATGCCTCGGCTCTCAAGAA
GCCTCAGGCCAAGCTGAAGAAAATGCATAATCTTGGACACAAAAATAACAACACTCCCAAGGAGCCTCAG
CCGAAGAGAGTGGAGGAGGTCTACCGGGCCTTGAAGAACGGGCTTGATGAGTACCTGGAGTTTCACCAGA
CGGAGCTGGACAAATTGACTGCTCAATTAAAAGATATGAAGAGAAACTCTCGCCTGGGTGTGCTGTATGA
CCTAGACAAGCAAATTAAAACGATTGAGAGATACATGCGACGCCTGGAGTTTCACATTAGTAAGGTAGAC
GAGCTCTATGAAGCCTATTGTATCCAACGGCGTCTCCAAGATGGTGCCAGCAAAATGAAGCAAGCCTTCG
CGACGTCCCCTGCCAGCAAGGCTGCCCGGGAGAGTCTGTCTGAGATCAACCGCAGCTACAAGGAATACAC
GGAGAACATGTGTGCCATTGAAGCGGAGTTGGAGAGTCTGCTGGGAGAATTCTCCATCAAGATGAAAGGT
CTGGCTGGCTTTGCCCGCCTCTGTCCTGGAGATCAATATGAAATTTTCATGAAGTATGGTCGGCAGAGGT
GGAAACTGAAGGGCAAAATAGAAGTGAATGGTAAACAGAGCTGGGATGGAGCAGAAACCGTCTTCCTGCC
CCTCATAGTTGGGTTCATTTCAATCAAGGTCACAGAACTCAAAGGACTGGCGACTCACATCCTGGTAGGC
AGTGTGACCTGCGAGACCAAAGAGCTGTTTGCAGCCCGACCCCAGGTGGTGGCTGTTGACATCAATGACC
TTGGTACCATCAAACTGAACCTGGAAATCACCTGGTATCCCTTTGACGTGGAGGACACAACCCCATCGTC
GGGCCCTGGGAACAAGACAGCTGCTCTCCAGCGAAGGATGTCCATGTACAGCCAGGGCACCCCAGAAACA
CCTACCTTCAAAGACCAGTCCTTCTTTAGATGGTTGCGGCTGTCTGTCTTGAGTGCCTTGCGAGACACTT
TCTTTGCCACGTTGCACCACAACCACTCTGTCGGTGACCTGCCTTCCCTCAGCCTGAACCCCAAGGCCCT
GCTAGAATTCTATTCAAATCTGCCAGATGACATCTTTGAGAGTGGAAAGGCTGCAGAGGAGAAAAGGCCA
CTGTCCCTCAGCTTCAGTGACCTGCAGGATGGAGACTGTGTCTTCACCTCCAGCTCAGCCACCTCCCCCT
CCAGTTCACACTCAGCCCATCCAGAGATTACCATCACCCCCGCAGAGCTTACCCACAGCAGCCTGTCCTC
ACAAAATGAGGGCACCGAGGACAGCAGCTCAGCGTCTTCCAGGAATTCCTTGGGTGAGGACCATGAGCCC
AAGTCCCACCCAAAGAGTGATACGGTAGAGCCCGGGAAGCCGGGTGTGGCTACAAGGTCTGGTACCGAGA
GCCTGTTTCTGGAGAGTAGTGTGGCCGAGGCTCTCCTGCAGGAATCGGATGAGGCCTCTGAGCTCAAGCC
CGTGGAACTGGACACTTTTGAAGGAAACATCACAAAGCAACTGGTGAAGAGGCTCACCTCGGCTGAGGGG
CCCGTCACTACTGACAAGCTTTTCTTTGAAGGCTCTGTTGGTAGCGAGTCTGAGGCTGGCCGGTCCTTTC
TGGATGGCAGCCTGGAAGATGCCTTCAATGGACTCTTCCTTGCATTAGACCCACACAAGAAGCAGTACAA
AGAGTTCCAGGATCTGAACCAAGAAGTCACTCACTTGGATGATGTTCTCAAATGCAAGCCGGCTGGCAGC
CGCAGCAGGTCTTCCAGCCTAAGTCTGACGGTTGAGAGTGCTTTAGAAAGCTTTGATTTCCTCAACACCT
CTGACTTTGACGAAGAGGAAGAGGATGGCGATGACGTCTGCCACGTTGGAGGAGGCGCAGACTCCGTGTT
TTCAGATACTGAGACTGAGAAGAGTGGTTACAGGTCAGTTCACCCGGAAGCCAGGGGTCACCTTAGCGAG
GCTCTGACTGAAGACACAGGTGTAGGCACCAGTGTGGCAGGAAGCCCGCTCCCACTCACCACAGGAAATG
AGAGCCTGGACATCACCATAGTCAAACATCTACAATACTGCACCCAGCTCATCCAGCAAATCGTCTTCTC
TAGCAAAACCCCCTTTGTGGCAAGAAGTCTCTTGGAGAAGCTGTCGAGGCAGGTCCTTGTGATGCAGAAG
CTGGCAGCCGTGAGTGACGAGAACCTCGGGAACATCACCTCTGTGGTGGAAGCCATACCAGAATTTCACA
AAAAGCTCTCCTTGCTGGCCTTCTGGACCAAATGCTGCAGCCCCAGCGGGGTCTACCACAGCTCCGCTGC
CCGCCTCATCAAGCAGCTGGAGGCCAGCTTCGCCAGAAGCATCAACAAAGACTATCCAGGACTGGCAGAG
CCAGTGTTTAGAACCCTGGTGTCCCAAATCCTGGACCGAGCTGAACCTCTCCTTTCCTCCAGCCTCTCGT
CGGAAGTCATCACTGTCTTCCAGTACTACAGCTTCTTCACCAGCCACGGTGTGAGTGACCTGGAGACTTA
CCTGGGCCAGCTAACCAGGCAAGTTGCCATGGTTCAGACTCTGCAGTCACTGAGAGATGAGAAACTGCTG
CAGACTATGAGCGACCTTGCACCCAGCAACCTCCCCGCTCAACAGGAAGTCCTCAGGACGCTGGCCCTGC
TGCTCACCAGGGATGACAATGAGGTCAGCGAAGCTGTGACACTCTACTTGGCAGCAGCCTCCAAAAATGA
GCACTTCAGAGAAAAGGCCTTGCTCTATTATTGCGAAGCACTAACGAAGGCCAATCTCCAGCTACAGAAG
GCAGCATGTCTGGCCCTAAAGAGCCTGGAGGCCACCGAAAGCATTAAAATGCTAGTGACGTTGTGTCAGT
CTGACACTGAAGAAATCAGAACCGTGGCCTCGGAAACCCTCCTCTCTCTTGGAGAAGACGGGCGACTGGC
GTACGAGCAATTAGACAAATTCCCTCGAGATTGTGTTAAAGTGGGAGGTCGTCATGGAACCGAAGTTGCC
ACAGCCTTTTAA

Translation (1053 aa):
MLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIENASALKKPQAKLKKMHNLGHKNNNTPKEPQ
PKRVEEVYRALKNGLDEYLEFHQTELDKLTAQLKDMKRNSRLGVLYDLDKQIKTIERYMRRLEFHISKVD
ELYEAYCIQRRLQDGASKMKQAFATSPASKAARESLSEINRSYKEYTENMCAIEAELESLLGEFSIKMKG
LAGFARLCPGDQYEIFMKYGRQRWKLKGKIEVNGKQSWDGAETVFLPLIVGFISIKVTELKGLATHILVG
SVTCETKELFAARPQVVAVDINDLGTIKLNLEITWYPFDVEDTTPSSGPGNKTAALQRRMSMYSQGTPET
PTFKDQSFFRWLRLSVLSALRDTFFATLHHNHSVGDLPSLSLNPKALLEFYSNLPDDIFESGKAAEEKRP
LSLSFSDLQDGDCVFTSSSATSPSSSHSAHPEITITPAELTHSSLSSQNEGTEDSSSASSRNSLGEDHEP
KSHPKSDTVEPGKPGVATRSGTESLFLESSVAEALLQESDEASELKPVELDTFEGNITKQLVKRLTSAEG
PVTTDKLFFEGSVGSESEAGRSFLDGSLEDAFNGLFLALDPHKKQYKEFQDLNQEVTHLDDVLKCKPAGS
RSRSSSLSLTVESALESFDFLNTSDFDEEEEDGDDVCHVGGGADSVFSDTETEKSGYRSVHPEARGHLSE
ALTEDTGVGTSVAGSPLPLTTGNESLDITIVKHLQYCTQLIQQIVFSSKTPFVARSLLEKLSRQVLVMQK
LAAVSDENLGNITSVVEAIPEFHKKLSLLAFWTKCCSPSGVYHSSAARLIKQLEASFARSINKDYPGLAE
PVFRTLVSQILDRAEPLLSSSLSSEVITVFQYYSFFTSHGVSDLETYLGQLTRQVAMVQTLQSLRDEKLL
QTMSDLAPSNLPAQQEVLRTLALLLTRDDNEVSEAVTLYLAAASKNEHFREKALLYYCEALTKANLQLQK
AACLALKSLEATESIKMLVTLCQSDTEEIRTVASETLLSLGEDGRLAYEQLDKFPRDCVKVGGRHGTEVA
TAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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