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Report for CCDS83999.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83999.1 Public Mus musculus 12 Tcl1 23 108 98 CCDS HistoryNCBI Gene:21432Re-query CCDS DB by CCDS ID:83999.1Re-query CCDS DB by GeneID:21432See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83999.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000176579.1 ENSMUSP00000135069.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176579.1Link to Ensembl Protein Viewer:ENSMUSP00000135069.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176579Re-query CCDS DB by Protein ID:ENSMUSP00000135069
Original member Current member NCBI NM_001309485.1 NP_001296414.1 Accepted alive Link to Nucleotide Sequence:NM_001309485.1Link to Protein Sequence:NP_001296414.1Re-query CCDS DB by Nucleotide ID:NM_001309485Re-query CCDS DB by Protein ID:NP_001296414Link to BLAST:NP_001296414.1

Chromosomal Locations for CCDS 83999.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 105218259 105218292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105218708 105218829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105222533 105222652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (276 nt):
ATGGCTACCCAGCGGGCACACAGGGCAGAGACACCTGCACACCCCAACCGCCTGTGGATCTGGGAGAAGC
ACGTGTACTTGGATGAGTTTCGTCGAAGCTGGCTGCCCGTAGTCATCAAGAGTAATGAAAAATTCCAGGT
GATCTTGCGCCAGGAAGATGTCACCTTGGGGGAAGCTATGTCCCCCAGTCAGCTGGTGCCTTACGAGCTG
CCTTTAATGTGGCAACTGTACCCCAAGGACAGTTTAGAGACGTGGAGGACATGTTGCTTGAACTGA

Translation (91 aa):
MATQRAHRAETPAHPNRLWIWEKHVYLDEFRRSWLPVVIKSNEKFQVILRQEDVTLGEAMSPSQLVPYEL
PLMWQLYPKDSLETWRTCCLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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