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Report for CCDS25970.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25970.1 Public Mus musculus 12 Ppm1a 23 108 98 CCDS HistoryNCBI Gene:19042Re-query CCDS DB by CCDS ID:25970.1Re-query CCDS DB by GeneID:19042See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25970.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021514.9 ENSMUSP00000021514.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021514.9Link to Ensembl Protein Viewer:ENSMUSP00000021514.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000021514Re-query CCDS DB by Protein ID:ENSMUSP00000021514
Original member Current member NCBI NM_008910.3 NP_032936.1 Accepted alive Link to Nucleotide Sequence:NM_008910.3Link to Protein Sequence:NP_032936.1Re-query CCDS DB by Nucleotide ID:NM_008910Re-query CCDS DB by Protein ID:NP_032936Link to BLAST:NP_032936.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032936.1 382 P49443 382 100% 0 0

Chromosomal Locations for CCDS 25970.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 72783703 72784536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72786672 72786789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72790633 72790741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72792778 72792835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72793712 72793741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1149 nt):
ATGGGAGCATTTTTAGACAAGCCAAAGATGGAGAAGCATAATGCCCAGGGGCAGGGGAATGGGTTACGAT
ACGGCCTAAGCAGCATGCAAGGTTGGCGAGTTGAAATGGAGGACGCACACACGGCTGTGATCGGTTTGCC
AAGTGGACTTGAGACATGGTCATTCTTTGCTGTATATGATGGGCATGCTGGTTCTCAGGTTGCCAAATAC
TGCTGTGAGCACTTGTTAGATCACATCACCAATAACCAGGATTTCAGAGGATCTGCAGGAGCACCTTCTG
TGGAGAACGTAAAGAATGGAATCAGAACAGGGTTTCTGGAGATTGATGAACACATGAGAGTTATGTCAGA
GAAGAAACATGGTGCAGATAGAAGCGGGTCAACAGCTGTGGGCGTCTTAATCTCTCCCCAACATACTTAT
TTCATTAACTGTGGAGACTCGAGAGGTTTACTTTGTAGGAATAGAAAAGTTCACTTCTTCACACAAGACC
ATAAACCAAGTAACCCGCTGGAAAAAGAACGAATTCAGAATGCAGGGGGCTCGGTGATGATTCAGCGTGT
CAATGGCTCTCTGGCTGTATCGAGGGCCCTTGGGGATTTCGATTACAAATGTGTCCATGGAAAAGGTCCC
ACAGAGCAGCTTGTCTCCCCAGAGCCCGAAGTCCATGATATTGAAAGGTCTGAAGAAGATGACCAGTTCA
TCATCCTTGCATGCGATGGCATCTGGGACGTCATGGGGAACGAAGAGCTCTGTGACTTTGTGAGATCCAG
ACTTGAAGTCACTGATGACCTTGAGAAAGTTTGCAATGAAGTAGTCGACACCTGCTTGTATAAGGGAAGT
CGAGACAACATGAGTGTGATTTTGATCTGTTTTCCAAGTGCACCCAAAGTCTCGGCAGAGGCGGTGAAGA
AGGAGGCGGAGCTGGACAAGTACCTGGAGAGCAGAGTAGAAGAAATCATAAAGAAGCAGGTGGAAGGCGT
CCCTGACTTAGTCCACGTGATGCGCACGTTAGCCAGTGAGAACATCCCCAGCCTCCCACCAGGGGGTGAA
TTGGCAAGCAAGCGGAATGTAATTGAAGCCGTTTACAATAGACTGAACCCTTACAAAAATGACGACACTG
ATTCTGCGTCAACCGATGATATGTGGTAA

Translation (382 aa):
MGAFLDKPKMEKHNAQGQGNGLRYGLSSMQGWRVEMEDAHTAVIGLPSGLETWSFFAVYDGHAGSQVAKY
CCEHLLDHITNNQDFRGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTY
FINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGP
TEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGS
RDNMSVILICFPSAPKVSAEAVKKEAELDKYLESRVEEIIKKQVEGVPDLVHVMRTLASENIPSLPPGGE
LASKRNVIEAVYNRLNPYKNDDTDSASTDDMW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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