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Report for CCDS25572.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25572.1 Public Mus musculus 11 Cacng5 23 108 98 CCDS HistoryNCBI Gene:140723Re-query CCDS DB by CCDS ID:25572.1Re-query CCDS DB by GeneID:140723See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25572.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039071.2 ENSMUSP00000047888.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039071.2Link to Ensembl Protein Viewer:ENSMUSP00000047888.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000039071Re-query CCDS DB by Protein ID:ENSMUSP00000047888
Original member Current member EBI ENSMUST00000106742.7 ENSMUSP00000102353.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106742.7Link to Ensembl Protein Viewer:ENSMUSP00000102353.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106742Re-query CCDS DB by Protein ID:ENSMUSP00000102353
Original member Current member NCBI NM_001199301.1 NP_001186230.1 Accepted alive Link to Nucleotide Sequence:NM_001199301.1Link to Protein Sequence:NP_001186230.1Re-query CCDS DB by Nucleotide ID:NM_001199301Re-query CCDS DB by Protein ID:NP_001186230Link to BLAST:NP_001186230.1
Original member Current member NCBI NM_080644.3 NP_542375.1 Accepted alive Link to Nucleotide Sequence:NM_080644.3Link to Protein Sequence:NP_542375.1Re-query CCDS DB by Nucleotide ID:NM_080644Re-query CCDS DB by Protein ID:NP_542375Link to BLAST:NP_542375.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186230.1 275 Q8VHW4 275 100% 0 0
NP_542375.1 275 Q8VHW4 275 100% 0 0

Chromosomal Locations for CCDS 25572.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 107877352 107877609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107877895 107878040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107881597 107881737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107882889 107882975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107884346 107884541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGAGCGCCTGTGGGAGGAAGGCCCTGACCCTGCTGAGCAGCGTCTTTGCCGTCTGCGGCCTGGGGCTGC
TGGGTATCGCGGTCAGCACGGACTACTGGCTCTACCTGGAAGAAGGCATAATCCTCCCACAGAACCAGAG
CACAGAGGTCAAGATGTCCCTGCACTCGGGCCTCTGGCGGGTCTGCTTCCTCGCTGGTGAGGAGCGAGGA
CGCTGTTTTACCATAGAGTATGTGATGCCCATGAACTCCCAGATGACGTCAGAATCCACTGTCAATGTTC
TAAAAATGATTCGCTCAGCCACGCCGTTCCCCCTCGTCAGCCTCTTCTTCATGTTCATTGGGTTTATCCT
GAGCAACATCGGGCACATCCGTCCGCACCGGACCATACTGGCCTTTGTCTCCGGCATCTTCTTTATCCTC
TCTGGCCTCTCTCTTGTGGTGGGCCTGGTGCTGTACATCTCCAGCATCAATGACGAGATGCTCAACAGAA
CCAAGGATGCAGAGACCTATTTCAACTACAAGTATGGATGGTCATTTGCCTTTGCTGCCATCTCCTTCCT
TTTAACAGAGAGTGCTGGGGTGATGTCTGTGTACCTGTTCATGAAGAGGTACACTGCTGAGGACATGTAC
AGACCTCACCCAGGCTTCTACCGGCCACGTCTGAGCAACTGCTCCGATTACTCTGGCCAGTTTCTACATC
CAGATGCCTGGATCCGGGGCCGCAGCCCCTCGGACATCTCCAGCGACGCCTCGCTACAGATGAACAGCAA
CTACCCAGCTTTGCTCAAGTGCCCAGACTATGACCAGATGTCATCATCTCCCTGCTGA

Translation (275 aa):
MSACGRKALTLLSSVFAVCGLGLLGIAVSTDYWLYLEEGIILPQNQSTEVKMSLHSGLWRVCFLAGEERG
RCFTIEYVMPMNSQMTSESTVNVLKMIRSATPFPLVSLFFMFIGFILSNIGHIRPHRTILAFVSGIFFIL
SGLSLVVGLVLYISSINDEMLNRTKDAETYFNYKYGWSFAFAAISFLLTESAGVMSVYLFMKRYTAEDMY
RPHPGFYRPRLSNCSDYSGQFLHPDAWIRGRSPSDISSDASLQMNSNYPALLKCPDYDQMSSSPC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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