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Report for CCDS24379.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24379.1 Public Mus musculus 11 Ccdc157 23 108 98 CCDS HistoryNCBI Gene:216516Re-query CCDS DB by CCDS ID:24379.1Re-query CCDS DB by GeneID:216516See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24379.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101626.8 ENSMUSP00000099148.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101626.8Link to Ensembl Protein Viewer:ENSMUSP00000099148.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000101626Re-query CCDS DB by Protein ID:ENSMUSP00000099148
Original member Current member NCBI NM_177616.3 NP_808284.2 Accepted alive Link to Nucleotide Sequence:NM_177616.3Link to Protein Sequence:NP_808284.2Re-query CCDS DB by Nucleotide ID:NM_177616Re-query CCDS DB by Protein ID:NP_808284Link to BLAST:NP_808284.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808284.2 616 Q5SPX1-2 616 100% 0 0

Chromosomal Locations for CCDS 24379.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 4143689 4143935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4144026 4144114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4144510 4144649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4146234 4146402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4146542 4146718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4147169 4147359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4147700 4147777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4148439 4149084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4149931 4150044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1851 nt):
ATGATGCCTCCTGCCCGGGCTGCAGGGCCATGCATGTCCGTGGGACTTACAGTACGGCGCTTCTGGAGCA
ACCTGCTTAGGCTGGGCCTGCTCTACCAGCAGGCAGTCCCCCAGAAAAGAGCAAACCAAGGGGAGATTTC
TATCACCAAGCCCACAGCTAAGGGTGAACCAGCCAGGAGCCCGGAATGTATGACTGCCAAGTTCATCAAG
CCCCCTTCCCCGGTGCCAGGCTTGCCTTTGATCTGCCAAGGGTTGCAGAGCATCCCTGTCAGAGTCTCCC
TGCGGAGCCCAGGTGGAACCTCTGAGAAAACTAAGAGCGTCTACTCCCAGACCGTCGAGACAGCCTTGGT
GCCCTGTGATGCTTGCACCAGTGTCCAGGGCAGCTTGTGGGAGGTGGGCAAGGTTGTTATCAGCCTGTGT
CAGAGCCAAAACTTGCCTTCATCCTTGGGCCAGTTCCAGAAGTTGGTGAAGGACAGCCTGGGGCTTAAAC
CACTGCCAGCTGCCACCGTGGGCCACTGGGCAGCAGAGCAGAGCAAAGACCTGACTCGTCTCAATAAACA
TGTGGGGGCCCTCACCCAGCTTGTTGGGCCCCTCAGGGCTCAGCTGGAAGACGCTGAGGGGCAGAAGGAT
GGGCTGAGGAAGCAGGTGAGCAAGCTGGAGCAGGCCCTGCAGCAGGAGCAAGGGCAGCGGCAGCGGCAGA
CAGAGGAGGCTGAGCGGACCCTGGCCAAGTGCGAGCATGACAGGCATCAGCTGCTCACAGAAACATGTGA
CCTAAAGACAAAGGTGGCCGTTTTGGAGGGAGACCTGAAGCAGCAGCAGAAGTCCATACAGGCCATGGAG
GCCAAGGCTCAGCAGCTGGAGGAGGAAGGGGAGCGTAGGGCAGCAGCTGAGAGGCAGGTGCAGCAGCTGG
AGGAGCAAGTGCAGCTGCTGGCGGGGCGGCTGGACGGGGCTAGCCAGCAGATCCGCTGGGCCAGCACGGA
GCTGGACAAGGAGAAGGCCCGCGTCGACAGCATGGTCCGTCATCAGGAGTCCCTGCAGGCCAAGCAGAGG
ACTTTGCTACAGCAGCTGGACTGTCTGGACCAGGAGCGGGAAGAGCTGCGGGGAAGTCTGGATGAGGCTG
AGGCCCAGCGGTCTGAGTTGGAGGAGCAGCTGCAGAGCCTCCAGAGCGATAGGGAGCAGGAACAGTGCCA
GCTACAGGCCCAGCAGGAACTGCTGCAGAGCCTGCAGCAGGAGAAACAGGACCTGGAACAGGTGACTACA
GACCTGCAGCTGACCATCTCTGAGCTACGGCAGCAGCTGGAGGAGCTGAAGGAACGGGAGCGGCTGCTGG
TGGCCTTCCCAGACCTGCACCAGCCAGAGGAGGCCCAGATCCAAAGCTCTAGCAATGTCACGCAGGACAT
GGAGAGGCAAGTGCAAGCCAATGCTATCCGTATCCAGGTCCTACAGGAGGAGAACAAGCGGCTCCAGTCG
ATGCTGACCAAAATCCGAGAGGTGGCCCAGCAGGGAGGCCTCAAGATGGTCCCGCAGGGCCAGCTCTGGT
CCCCTCCCTACAAGGGCATCCAGGGAGCAACCCCTCCAGCCCAGGCCCAGAGTGCATTCTCAGGGTTGAC
AGGCAGACGGCAGTCTCCTGGCAGCAGGACAAGCAGCACAGGCAGGACCCATCCTGGCGGGCTCCGTACA
TCCCCGTCTCGGCAGCCCGGCGGCTTGCCCAGCAAGTTCTCTTTGGGGGATGGAAGTCATTCAGCATCCT
GCACCCAGAATCCCATAAGGGCCTTGGCCAGGCTGAGGAGAAAGCTTTCACCGAACCGTCAGGCTGGTTC
TACATACCAGCCCCAGGAGCGGCCCACGTAA

Translation (616 aa):
MMPPARAAGPCMSVGLTVRRFWSNLLRLGLLYQQAVPQKRANQGEISITKPTAKGEPARSPECMTAKFIK
PPSPVPGLPLICQGLQSIPVRVSLRSPGGTSEKTKSVYSQTVETALVPCDACTSVQGSLWEVGKVVISLC
QSQNLPSSLGQFQKLVKDSLGLKPLPAATVGHWAAEQSKDLTRLNKHVGALTQLVGPLRAQLEDAEGQKD
GLRKQVSKLEQALQQEQGQRQRQTEEAERTLAKCEHDRHQLLTETCDLKTKVAVLEGDLKQQQKSIQAME
AKAQQLEEEGERRAAAERQVQQLEEQVQLLAGRLDGASQQIRWASTELDKEKARVDSMVRHQESLQAKQR
TLLQQLDCLDQEREELRGSLDEAEAQRSELEEQLQSLQSDREQEQCQLQAQQELLQSLQQEKQDLEQVTT
DLQLTISELRQQLEELKERERLLVAFPDLHQPEEAQIQSSSNVTQDMERQVQANAIRIQVLQEENKRLQS
MLTKIREVAQQGGLKMVPQGQLWSPPYKGIQGATPPAQAQSAFSGLTGRRQSPGSRTSSTGRTHPGGLRT
SPSRQPGGLPSKFSLGDGSHSASCTQNPIRALARLRRKLSPNRQAGSTYQPQERPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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