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Report for CCDS59550.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59550.1 Public Mus musculus 10 Washc3 23 108 98 CCDS HistoryNCBI Gene:67282Re-query CCDS DB by CCDS ID:59550.1Re-query CCDS DB by GeneID:67282See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 13, NCBI annotation release 103, Ensembl annotation release 72

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59550.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000182183.7 ENSMUSP00000138540.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000182183.7Link to Ensembl Protein Viewer:ENSMUSP00000138540.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000182183Re-query CCDS DB by Protein ID:ENSMUSP00000138540
Original member NCBI NM_001122960.1 NP_001116432.1 Updated not alive Link to Nucleotide Sequence:NM_001122960.1Link to Protein Sequence:NP_001116432.1Re-query CCDS DB by Nucleotide ID:NM_001122960Re-query CCDS DB by Protein ID:NP_001116432
Current member NCBI NM_001122960.2 NP_001116432.1 Accepted alive Link to Nucleotide Sequence:NM_001122960.2Link to Protein Sequence:NP_001116432.1Re-query CCDS DB by Nucleotide ID:NM_001122960Re-query CCDS DB by Protein ID:NP_001116432Link to BLAST:NP_001116432.1

Chromosomal Locations for CCDS 59550.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 88201242 88201292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88201812 88201910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88213647 88213712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88215967 88216074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88219253 88219360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88234394 88234458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88245756 88245840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGGATGAGGATGGGCTTCCTCTCATGGGGTCAGGCATAGACCTGACCAAGGTGCCAGCTATTCAACAGA
AAAGAACCGTGGCCTTTCTAAACCAGTTTGTGGTGCACACTGTGCAGTTTCTCAACCGGTTTTCCGCAGT
TTGTGAGGAGAAACTGGCAGACCTTTCTCTCCGGATTCAGCAAATTGAAACAACTCTCAATATTTTAGAT
GCAAAGCTGTCATCTATCCCAGGCCTAGAGGACGTCACAGTTGAAGTGTCTCCTTTAAATGTCACTGCTG
TCACAAACGGATCACATTCTGAAACCACTTCGGAGCAAACGCAGAATAGCACGCAAGACTCTGGAGCACA
GGAGAGTGAAGCGCCATCAGAAAATGTCCTGACCGTAGCCAAGGATCCACGGTATGCCAGATACCTCAAG
ATGGTTCAAGTGGGTGTTCCAGTGATGGCAATCAGAGACAAGATGATCTCAGAAGGACTGGACCCGGAGC
TACTGGAGAAGCCAGATGCCCCGGTGCCAAATGGCGAAAGCGAAAGAGCCGTAGAAGAAAGTTCAGATAG
TGACTCTTCCTTCAGTGACTAA

Translation (193 aa):
MDEDGLPLMGSGIDLTKVPAIQQKRTVAFLNQFVVHTVQFLNRFSAVCEEKLADLSLRIQQIETTLNILD
AKLSSIPGLEDVTVEVSPLNVTAVTNGSHSETTSEQTQNSTQDSGAQESEAPSENVLTVAKDPRYARYLK
MVQVGVPVMAIRDKMISEGLDPELLEKPDAPVPNGESERAVEESSDSDSSFSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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