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Report for CCDS19604.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19604.1 Public Mus musculus 5 Wsb2 23 108 98 CCDS HistoryNCBI Gene:59043Re-query CCDS DB by CCDS ID:19604.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19604.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031309.15 ENSMUSP00000031309.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031309.15Link to Ensembl Protein Viewer:ENSMUSP00000031309.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000031309Re-query CCDS DB by Protein ID:ENSMUSP00000031309
Original member Current member NCBI NM_021539.5 NP_067514.2 Accepted alive Link to Nucleotide Sequence:NM_021539.5Link to Protein Sequence:NP_067514.2Re-query CCDS DB by Nucleotide ID:NM_021539Re-query CCDS DB by Protein ID:NP_067514Link to BLAST:NP_067514.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067514.2 404 O54929 404 100% 0 0

Chromosomal Locations for CCDS 19604.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 117357461 117357473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117363591 117363759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117370691 117370935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117371089 117371220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117374113 117374213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117375769 117375941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117376497 117376607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117376691 117376798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117377390 117377552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1215 nt):
ATGGAGGCCGGAGAGGAGCCGCTGCTGCTGGCTGAACTCAAGCCTGGGCGCCCCCACCAGTTCGACTGGA
AGTCAAGCTGTGAGACCTGGAGCGTGGCCTTCTCGCCAGACGGTTCCTGGTTCGCCTGGTCTCAAGGACA
CTGCGTGGTCAAGCTGGTCCCCTGGCCCTTAGAGGAACAGTTCATCCCTAAAGGATTCGAAGCCAAGAGC
CGAAGCAGCAAGAATGACCCAAAAGGACGGGGCAGTCTGAAGGAGAAGACGCTGGACTGTGGCCAGATTG
TGTGGGGGCTGGCCTTCAGCCCATGGCCCTCTCCACCCAGCAGGAAACTCTGGGCACGTCACCATCCCCA
GGCGCCTGATGTTTCTTGCCTGATCCTGGCCACAGGTCTCAACGATGGGCAGATCAAGATTTGGGAGGTA
CAGACAGGCCTCCTGCTTCTGAATCTTTCTGGCCACCAAGACGTCGTGAGAGATCTGAGCTTCACGCCCA
GCGGCAGTTTGATTTTGGTCTCTGCATCCCGGGATAAGACACTTCGAATTTGGGACCTGAATAAGCACGG
TAAGCAGATCCAGGTGTTATCCGGCCATCTGCAGTGGGTTTACTGCTGCTCCATCTCCCCTGACTGTAGC
ATGCTGTGCTCTGCAGCTGGGGAGAAGTCGGTCTTTCTGTGGAGCATGCGGTCCTACACACTAATCCGGA
AACTAGAAGGCCACCAAAGCAGTGTTGTCTCCTGTGATTTCTCTCCTGATTCAGCCTTGCTTGTCACAGC
TTCGTATGACACCAGTGTGATTATGTGGGACCCCTACACCGGCGAGAGGCTGAGGTCACTTCATCACACA
CAGCTTGAACCCACCATGGATGACAGTGACGTCCACATGAGCTCCCTGAGGTCCGTGTGCTTCTCACCTG
AAGGCTTGTATCTCGCTACGGTGGCAGATGACAGGCTGCTCAGGATCTGGGCTCTGGAACTGAAGGCTCC
GGTTGCCTTTGCTCCGATGACCAATGGTCTTTGCTGCACGTTCTTCCCACACGGTGGAATTATTGCCACA
GGGACGAGAGATGGCCATGTCCAGTTCTGGACAGCTCCCCGGGTCCTGTCCTCACTGAAGCACTTATGCA
GGAAAGCCCTCCGAAGTTTCCTGACAACGTATCAAGTCCTAGCACTGCCAATCCCCAAGAAGATGAAAGA
GTTCCTCACATACAGGACTTTCTAG

Translation (404 aa):
MEAGEEPLLLAELKPGRPHQFDWKSSCETWSVAFSPDGSWFAWSQGHCVVKLVPWPLEEQFIPKGFEAKS
RSSKNDPKGRGSLKEKTLDCGQIVWGLAFSPWPSPPSRKLWARHHPQAPDVSCLILATGLNDGQIKIWEV
QTGLLLLNLSGHQDVVRDLSFTPSGSLILVSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCS
MLCSAAGEKSVFLWSMRSYTLIRKLEGHQSSVVSCDFSPDSALLVTASYDTSVIMWDPYTGERLRSLHHT
QLEPTMDDSDVHMSSLRSVCFSPEGLYLATVADDRLLRIWALELKAPVAFAPMTNGLCCTFFPHGGIIAT
GTRDGHVQFWTAPRVLSSLKHLCRKALRSFLTTYQVLALPIPKKMKEFLTYRTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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