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Report for CCDS48284.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48284.1 Public Mus musculus 1 Myl1 23 108 98 CCDS HistoryNCBI Gene:17901Re-query CCDS DB by CCDS ID:48284.1Re-query CCDS DB by GeneID:17901See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48284.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119429.7 ENSMUSP00000112861.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119429.7Link to Ensembl Protein Viewer:ENSMUSP00000112861.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119429Re-query CCDS DB by Protein ID:ENSMUSP00000112861
Original member NCBI NM_001113387.1 NP_001106858.1 Updated not alive Link to Nucleotide Sequence:NM_001113387.1Link to Protein Sequence:NP_001106858.1Re-query CCDS DB by Nucleotide ID:NM_001113387Re-query CCDS DB by Protein ID:NP_001106858
Current member NCBI NM_001113387.2 NP_001106858.1 Accepted alive Link to Nucleotide Sequence:NM_001113387.2Link to Protein Sequence:NP_001106858.1Re-query CCDS DB by Nucleotide ID:NM_001113387Re-query CCDS DB by Protein ID:NP_001106858Link to BLAST:NP_001106858.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106858.1 150 P05977-2 150 100% 0 0

Chromosomal Locations for CCDS 48284.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 66925037 66925065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66926208 66926285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66926534 66926707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66930186 66930329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66934518 66934542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66935276 66935278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (453 nt):
ATGTCCTTCAGTGCTGACCAGATTGCCGACTTCAAGGAGGCATTTCTCCTGTTTGACAGAACAGGTGAAT
GCAAGATCACCTTAAGTCAGGTGGGAGACGTCCTCCGGGCTCTGGGCACCAATCCCACCAATGCAGAGGT
CAAGAAGGTTCTTGGGAACCCCAGCAATGAAGAGATGAATGCTAAGAAAATCGAGTTTGAACAGTTTCTG
CCCATGATGCAAGCTATCTCCAACAACAAGGACCAGGGAGGTTATGAAGATTTCGTTGAGGGTCTGCGTG
TCTTCGACAAGGAGGGCAATGGCACCGTCATGGGTGCTGAACTCCGCCATGTCCTCGCCACTCTGGGAGA
GAAGATGAAGGAGGAAGAGGTAGAAGCGTTGCTGGCAGGCCAGGAGGACTCCAATGGCTGCATCAACTAT
GAAGCTTTTGTCAAACACATCATGTCTGTCTAA

Translation (150 aa):
MSFSADQIADFKEAFLLFDRTGECKITLSQVGDVLRALGTNPTNAEVKKVLGNPSNEEMNAKKIEFEQFL
PMMQAISNNKDQGGYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALLAGQEDSNGCINY
EAFVKHIMSV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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