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Report for CCDS14905.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14905.1 Public Mus musculus 1 Tbc1d8 23 108 98 CCDS HistoryNCBI Gene:54610Re-query CCDS DB by CCDS ID:14905.1Re-query CCDS DB by GeneID:54610See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14905.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054462.10 ENSMUSP00000049967.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054462.10Link to Ensembl Protein Viewer:ENSMUSP00000049967.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000054462Re-query CCDS DB by Protein ID:ENSMUSP00000049967
Original member Current member NCBI NM_018775.4 NP_061245.3 Accepted alive Link to Nucleotide Sequence:NM_018775.4Link to Protein Sequence:NP_061245.3Re-query CCDS DB by Nucleotide ID:NM_018775Re-query CCDS DB by Protein ID:NP_061245Link to BLAST:NP_061245.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061245.3 1134 Q9Z1A9 1134 100% 0 0

Chromosomal Locations for CCDS 14905.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 39372349 39372786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39373727 39373824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39374082 39374171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39376424 39376489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39376878 39377118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39379455 39379523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39379995 39380093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39380228 39380357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39381277 39381562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39385121 39385238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39385998 39386212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39389308 39389458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39391117 39391287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39392057 39392254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39394065 39394272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39402683 39402923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39405291 39405519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39406752 39406870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39426068 39426178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39478440 39478566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3405 nt):
ATGTGGCTCAAGCCCGAGGAGGTGCTGCTCAAGAACGCGCTGAAGCTCTGGGTGACCCAGAAGAGCAGCT
GCTACTTCGTCTTGCAGCGGCGCCGCGGGCACGGCGAGGGGGGCGGCCGCCTCACCGGTCGCCTTGTCGG
TGCCCTGGACGCGGTGCTGGATTCCAGCGCACGGGTTGCTCCATTTCGGATTCTGCTTCAAGTTCCTGGG
TCGCAGGTGTATTCTCCCATAGCATGTGGTGCAACATTGGAGGAAATCAACCGGCACTGGGACTGGCTGG
AGCAGAACCTGCTGCACACCCTGTCAGTCTTTGACAACAAAGATGACATCGCCAGCTTTGTCAAAGGGAA
GGTGAAGGCTCTGATCGCAGAGGAGACCAGCAGCAGACTGGCAGAGCAGGAGGAGGAGCCCGAGAAGTTC
CGAGAAGCTCTGGTGAAGTTCGAGGCCAGGTTCAACTTCCCCGAGGCGGAGAAGCTGGTCACGTACTACT
CGTGCTGCTGCTGGAAGGGCAGGGTGCCCCGCCAGGGCTGGCTGTACCTCAGCATCAACCACCTCTGCTT
CTATTCCTTCTTCCTGGGCAAGGAGCTTAAACTTGTGATCCCCTGGGTCGATATCCAGAAGCTGGAGCGA
ACCTCCAATGTCTTTCTCACGGACACCATCCGGATCACTACACAGAATAAGGAGCGAGACTTCTCCACGT
TTCTGAACCTGGACGAGGTGTTCAAGATCATGGAGCAGCTGGCAGATGTCACGCTCCGGAGGCTGCTGGA
CAACGAGGTTTTTGATCTTGACCCCGACCTGCAGGAGCCTAGCCAGATCACAAAGAGGGACCTGGAGGCC
AGAGCACAGAACGAGTTCTTCCGGGCTTTCTTCAGGCTGCCGAGGGAGGAGAAGCTGCACGCTGTGGCAG
ACTGTTCCCTCTGGACGCCCTTCAGTCGCTGCCACACAGCCGGACGGATATTCTCCTCTGACAGCTACAT
CTGCTTTGCCAGCAGAGAGGATGGCTGCTGTAATGTTGTGCTTCCCCTGAGAGAGGTAGTGAGCATTGAG
AAGATGGAAGACACGAGCCTGCTGCCCAACCCCATCATCGTGAGCATCCGCAGCAAGATGGCCTTCCAGT
TCATTGAGCTCAAGGACAGAGAGAACTTGGTGGAGGGCCTGCTGCTGAGACTGAAGCAGGTCCACGCCAA
CCACCCTGTGCACTATGAGACCTCGCCAAGTGATGATGACATGGCTTCACCTGTGTTTTACTCAGCAAGC
ATCTGCACTGACAAGTTTGGGGATCTTGAGATGGTGGCTTCTCAAAGTAGCGAAGAGAGAGAGGAGAAGC
GCCCCCTGCCACACCCCGAGCCCCTGACTGCCGTCTTCCAGCAGTCTGGCAGCCAGAGCCCCGACTCCCG
CCTGTCCCGGGAACAGATAAAAATCAGTCTGTGGAACGACCACTTTGTAGAGTACGGCAGGACCGTGTGC
ATGTTCCGCACTGAAAAGATCCGGAAGCTGGTGGCCATGGGGATCCCCGAGTCGTTACGTGGAAGGCTGT
GGCTGCTTTTCTCAGATGCTGTGACGGACCTGGCCTCACACCCTGGGTACTATGGGAATCTGGTGGAGCA
GTCTCTGGGGCGCTGCTGCCTGGTGACAGAGGAGATAGAGAGGGACCTGCACCGCTCTCTCCCTGAGCAC
CCCGCCTTCCAGAATGAAACTGGCATTGCTGCCTTGAGGCGGGTGCTGACAGCGTATGCCCACCGGAACC
CCAAGATTGGATACTGCCAGTCCATGAACATCCTGACCTCTGTGTTGCTGCTGTATGCCAAAGAGGAGGA
AGCCTTCTGGCTGCTGGTCGCTGTGTGTGAGCGGATGCTGCCTGATTACTTCAACCACCGGGTGATTGGG
GCTCAGGTGGACCAGTCTGTGTTTGAGGAGCTCATCAAGGAGCAACTCCCAGAGCTGGCGGAGCACATGA
GCGACCTCTCGGCGTTAGCGTCCATCTCCCTCTCCTGGTTCCTGACTCTGTTCCTCAGCATCATGCCGCT
GGAGAGTGCTGTGCACGTCGTTGACTGCTTCTTCTACGATGGGATCAAGGCCATCTTCCAGCTGGGGCTG
GCTGTGCTGGAAGCCAATGCAGAGGAACTGTGCAGTAGCAAAGATGACGGACAGGCCCTGATGGTCCTCA
GCAGGTTTCTAGATCACATTAAGAATGAAGACAGCCCGGGGCCCCCCATTGGCAGCCACCATGCCTTTTT
CTCTGATGATCAGGAGCCATATCCTGTGACCGACATTGCTGACCTGATCCGGGACTCCTATGAGAAATTT
GGAAACCAGTCTGTGGAGCAGATTGAACATCTACGCTGCAAGCACAGGATCAGGGTCCTGCAAGGACACG
AGGACACCACCAAGCAGAATGTGCTCCGTGTCGTTATCCCAGAAGTCTCCATTCTTCCTGAAGACCTTGA
GGAACTCTATGACTTATTCAAGAGAGCACACATGATGAGCTGTTACTGGGAGCACCACAGGCCCATGGCC
CTGCGCCATGATCCCAGCAGGCCCTATGCTGAACAGTACCGCATCGATGCCCGGCAGTTTGCACACCTAT
TCCAGTTGGTATCGCCATGGACCTGTGGGGTCCATACAGAGATCCTTGCTGAGAGGCTCTTCAGGCTTCT
GGACGACAACATGGACCAGCTCATAGAGTTCAAAGCCTTCACAAGCTGTCTAGACATCATGTACAATGGA
GAAATGAACGAGAAGATTAAGCTGCTGTACAGGCTTCATATCCCCCCAGCACTCACTGAAAATGACAGAG
ATAGCCAGTCACCATTGAAGAATCCTCTGTTGTCAACTTCAAGACCCCTGGTCCTGGGCAAACCCAATGG
TGACACAATTGACTATCAGAAACAGCTGAAACAGATGATTAAGGATTTAGCCAAAGAAAAGGATAAAATG
GAGAAAGAGTTGCCCAAAATGAGTCAGAGAGAATTTATCCAGTTCTGTAAAACTCTGTACAGTATGTTCC
ATGAAGATCCAGAGGAAAATGACCTGTATCAAGCCATTGCCACAGTAACCACTCTGCTACTGCAGATTGG
AGAAGTGGGCCAGCGAGGTAGCAGTTCAGGAAGCTGCTCCCAAGAATGTGAGGAGCCGCAGGCCTCGGCT
CCTCCCGAACAGGACTCAGTTTTTGCTGAGGCTGGAAAGAGTCCCCAGGCCTTCCCCGAGACTGAAGGGG
ACTGGACTGTGTCCCTTGAACATATTTTGGCATCCCTTCTCACTGAGCAGTCACTGGTGAATTTTTTTGA
AAAGCCACTCAACATTAAATCCAAACTTGAAAACGCCAAGCTCAATCAGTACAGTCTCAAAGTTTTGGAA
ATGAGCCACCCACCACAGGCAGAACTGAAGCTCAATGACCTGTAG

Translation (1134 aa):
MWLKPEEVLLKNALKLWVTQKSSCYFVLQRRRGHGEGGGRLTGRLVGALDAVLDSSARVAPFRILLQVPG
SQVYSPIACGATLEEINRHWDWLEQNLLHTLSVFDNKDDIASFVKGKVKALIAEETSSRLAEQEEEPEKF
REALVKFEARFNFPEAEKLVTYYSCCCWKGRVPRQGWLYLSINHLCFYSFFLGKELKLVIPWVDIQKLER
TSNVFLTDTIRITTQNKERDFSTFLNLDEVFKIMEQLADVTLRRLLDNEVFDLDPDLQEPSQITKRDLEA
RAQNEFFRAFFRLPREEKLHAVADCSLWTPFSRCHTAGRIFSSDSYICFASREDGCCNVVLPLREVVSIE
KMEDTSLLPNPIIVSIRSKMAFQFIELKDRENLVEGLLLRLKQVHANHPVHYETSPSDDDMASPVFYSAS
ICTDKFGDLEMVASQSSEEREEKRPLPHPEPLTAVFQQSGSQSPDSRLSREQIKISLWNDHFVEYGRTVC
MFRTEKIRKLVAMGIPESLRGRLWLLFSDAVTDLASHPGYYGNLVEQSLGRCCLVTEEIERDLHRSLPEH
PAFQNETGIAALRRVLTAYAHRNPKIGYCQSMNILTSVLLLYAKEEEAFWLLVAVCERMLPDYFNHRVIG
AQVDQSVFEELIKEQLPELAEHMSDLSALASISLSWFLTLFLSIMPLESAVHVVDCFFYDGIKAIFQLGL
AVLEANAEELCSSKDDGQALMVLSRFLDHIKNEDSPGPPIGSHHAFFSDDQEPYPVTDIADLIRDSYEKF
GNQSVEQIEHLRCKHRIRVLQGHEDTTKQNVLRVVIPEVSILPEDLEELYDLFKRAHMMSCYWEHHRPMA
LRHDPSRPYAEQYRIDARQFAHLFQLVSPWTCGVHTEILAERLFRLLDDNMDQLIEFKAFTSCLDIMYNG
EMNEKIKLLYRLHIPPALTENDRDSQSPLKNPLLSTSRPLVLGKPNGDTIDYQKQLKQMIKDLAKEKDKM
EKELPKMSQREFIQFCKTLYSMFHEDPEENDLYQAIATVTTLLLQIGEVGQRGSSSGSCSQECEEPQASA
PPEQDSVFAEAGKSPQAFPETEGDWTVSLEHILASLLTEQSLVNFFEKPLNIKSKLENAKLNQYSLKVLE
MSHPPQAELKLNDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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