CCDS Report for Consensus CDS

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Report for CCDS87821.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
87821.1	Public	Mus musculus	1	Tbc1d8	23	108	98

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87821.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000193823.1	ENSMUSP00000141750.1	Accepted	alive
		NCBI	NM_001357522.1	NP_001344451.1	Accepted	alive

Chromosomal Locations for CCDS 87821.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)

Genome Browser links:

Chromosome	Start	Stop
1	39373673	39373824
1	39374082	39374171
1	39376424	39376489
1	39376878	39377118
1	39379455	39379523
1	39379995	39380093
1	39380228	39380357
1	39381277	39381562
1	39385121	39385238
1	39385998	39386212
1	39389308	39389458
1	39391117	39391287
1	39392057	39392254
1	39394065	39394272
1	39402683	39402923
1	39405291	39405519
1	39406752	39406870
1	39426068	39426178
1	39478440	39478566

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3021 nt):
ATGTGGCTCAAGCCCGAGGAGGTGCTGCTCAAGAACGCGCTGAAGCTCTGGGTGACCCAGAAGAGCAGCT GCTACTTCGTCTTGCAGCGGCGCCGCGGGCACGGCGAGGGGGGCGGCCGCCTCACCGGTCGCCTTGTCGG TGCCCTGGACGCGGTGCTGGATTCCAGCGCACGGGTTGCTCCATTTCGGATTCTGCTTCAAGTTCCTGGG TCGCAGGTGTATTCTCCCATAGCATGTGGTGCAACATTGGAGGAAATCAACCGGCACTGGGACTGGCTGG AGCAGAACCTGCTGCACACCCTGTCAGTCTTTGACAACAAAGATGACATCGCCAGCTTTGTCAAAGGGAA GGTGAAGGCTCTGATCGCAGAGGAGACCAGCAGCAGACTGGCAGAGCAGGAGGAGGAGCCCGAGAAGTTC CGAGAAGCTCTGGTGAAGTTCGAGGCCAGGTTCAACTTCCCCGAGGCGGAGAAGCTGGTCACGTACTACT CGTGCTGCTGCTGGAAGGGCAGGGTGCCCCGCCAGGGCTGGCTGTACCTCAGCATCAACCACCTCTGCTT CTATTCCTTCTTCCTGGGCAAGGAGCTTAAACTTGTGATCCCCTGGGTCGATATCCAGAAGCTGGAGCGA ACCTCCAATGTCTTTCTCACGGACACCATCCGGATCACTACACAGAATAAGGAGCGAGACTTCTCCACGT TTCTGAACCTGGACGAGGTGTTCAAGATCATGGAGCAGCTGGCAGATGTCACGCTCCGGAGGCTGCTGGA CAACGAGGTTTTTGATCTTGACCCCGACCTGCAGGAGCCTAGCCAGATCACAAAGAGGGACCTGGAGGCC AGAGCACAGAACGAGTTCTTCCGGGCTTTCTTCAGGCTGCCGAGGGAGGAGAAGCTGCACGCTGTGGCAG ACTGTTCCCTCTGGACGCCCTTCAGTCGCTGCCACACAGCCGGACGGATATTCTCCTCTGACAGCTACAT CTGCTTTGCCAGCAGAGAGGATGGCTGCTGTAATGTTGTGCTTCCCCTGAGAGAGGTAGTGAGCATTGAG AAGATGGAAGACACGAGCCTGCTGCCCAACCCCATCATCGTGAGCATCCGCAGCAAGATGGCCTTCCAGT TCATTGAGCTCAAGGACAGAGAGAACTTGGTGGAGGGCCTGCTGCTGAGACTGAAGCAGGTCCACGCCAA CCACCCTGTGCACTATGAGACCTCGCCAAGTGATGATGACATGGCTTCACCTGTGTTTTACTCAGCAAGC ATCTGCACTGACAAGTTTGGGGATCTTGAGATGGTGGCTTCTCAAAGTAGCGAAGAGAGAGAGGAGAAGC GCCCCCTGCCACACCCCGAGCCCCTGACTGCCGTCTTCCAGCAGTCTGGCAGCCAGAGCCCCGACTCCCG CCTGTCCCGGGAACAGATAAAAATCAGTCTGTGGAACGACCACTTTGTAGAGTACGGCAGGACCGTGTGC ATGTTCCGCACTGAAAAGATCCGGAAGCTGGTGGCCATGGGGATCCCCGAGTCGTTACGTGGAAGGCTGT GGCTGCTTTTCTCAGATGCTGTGACGGACCTGGCCTCACACCCTGGGTACTATGGGAATCTGGTGGAGCA GTCTCTGGGGCGCTGCTGCCTGGTGACAGAGGAGATAGAGAGGGACCTGCACCGCTCTCTCCCTGAGCAC CCCGCCTTCCAGAATGAAACTGGCATTGCTGCCTTGAGGCGGGTGCTGACAGCGTATGCCCACCGGAACC CCAAGATTGGATACTGCCAGTCCATGAACATCCTGACCTCTGTGTTGCTGCTGTATGCCAAAGAGGAGGA AGCCTTCTGGCTGCTGGTCGCTGTGTGTGAGCGGATGCTGCCTGATTACTTCAACCACCGGGTGATTGGG GCTCAGGTGGACCAGTCTGTGTTTGAGGAGCTCATCAAGGAGCAACTCCCAGAGCTGGCGGAGCACATGA GCGACCTCTCGGCGTTAGCGTCCATCTCCCTCTCCTGGTTCCTGACTCTGTTCCTCAGCATCATGCCGCT GGAGAGTGCTGTGCACGTCGTTGACTGCTTCTTCTACGATGGGATCAAGGCCATCTTCCAGCTGGGGCTG GCTGTGCTGGAAGCCAATGCAGAGGAACTGTGCAGTAGCAAAGATGACGGACAGGCCCTGATGGTCCTCA GCAGGTTTCTAGATCACATTAAGAATGAAGACAGCCCGGGGCCCCCCATTGGCAGCCACCATGCCTTTTT CTCTGATGATCAGGAGCCATATCCTGTGACCGACATTGCTGACCTGATCCGGGACTCCTATGAGAAATTT GGAAACCAGTCTGTGGAGCAGATTGAACATCTACGCTGCAAGCACAGGATCAGGGTCCTGCAAGGACACG AGGACACCACCAAGCAGAATGTGCTCCGTGTCGTTATCCCAGAAGTCTCCATTCTTCCTGAAGACCTTGA GGAACTCTATGACTTATTCAAGAGAGCACACATGATGAGCTGTTACTGGGAGCACCACAGGCCCATGGCC CTGCGCCATGATCCCAGCAGGCCCTATGCTGAACAGTACCGCATCGATGCCCGGCAGTTTGCACACCTAT TCCAGTTGGTATCGCCATGGACCTGTGGGGTCCATACAGAGATCCTTGCTGAGAGGCTCTTCAGGCTTCT GGACGACAACATGGACCAGCTCATAGAGTTCAAAGCCTTCACAAGCTGTCTAGACATCATGTACAATGGA GAAATGAACGAGAAGATTAAGCTGCTGTACAGGCTTCATATCCCCCCAGCACTCACTGAAAATGACAGAG ATAGCCAGTCACCATTGAAGAATCCTCTGTTGTCAACTTCAAGACCCCTGGTCCTGGGCAAACCCAATGG TGACACAATTGACTATCAGAAACAGCTGAAACAGATGATTAAGGATTTAGCCAAAGAAAAGGATAAAATG GAGAAAGAGTTGCCCAAAATGAGTCAGGTATGGCATCTTGACTTCCCACAACACTGCTGTGTTCCAGTCA CCTCTTTGTAA
Translation (1006 aa):
MWLKPEEVLLKNALKLWVTQKSSCYFVLQRRRGHGEGGGRLTGRLVGALDAVLDSSARVAPFRILLQVPG SQVYSPIACGATLEEINRHWDWLEQNLLHTLSVFDNKDDIASFVKGKVKALIAEETSSRLAEQEEEPEKF REALVKFEARFNFPEAEKLVTYYSCCCWKGRVPRQGWLYLSINHLCFYSFFLGKELKLVIPWVDIQKLER TSNVFLTDTIRITTQNKERDFSTFLNLDEVFKIMEQLADVTLRRLLDNEVFDLDPDLQEPSQITKRDLEA RAQNEFFRAFFRLPREEKLHAVADCSLWTPFSRCHTAGRIFSSDSYICFASREDGCCNVVLPLREVVSIE KMEDTSLLPNPIIVSIRSKMAFQFIELKDRENLVEGLLLRLKQVHANHPVHYETSPSDDDMASPVFYSAS ICTDKFGDLEMVASQSSEEREEKRPLPHPEPLTAVFQQSGSQSPDSRLSREQIKISLWNDHFVEYGRTVC MFRTEKIRKLVAMGIPESLRGRLWLLFSDAVTDLASHPGYYGNLVEQSLGRCCLVTEEIERDLHRSLPEH PAFQNETGIAALRRVLTAYAHRNPKIGYCQSMNILTSVLLLYAKEEEAFWLLVAVCERMLPDYFNHRVIG AQVDQSVFEELIKEQLPELAEHMSDLSALASISLSWFLTLFLSIMPLESAVHVVDCFFYDGIKAIFQLGL AVLEANAEELCSSKDDGQALMVLSRFLDHIKNEDSPGPPIGSHHAFFSDDQEPYPVTDIADLIRDSYEKF GNQSVEQIEHLRCKHRIRVLQGHEDTTKQNVLRVVIPEVSILPEDLEELYDLFKRAHMMSCYWEHHRPMA LRHDPSRPYAEQYRIDARQFAHLFQLVSPWTCGVHTEILAERLFRLLDDNMDQLIEFKAFTSCLDIMYNG EMNEKIKLLYRLHIPPALTENDRDSQSPLKNPLLSTSRPLVLGKPNGDTIDYQKQLKQMIKDLAKEKDKM EKELPKMSQVWHLDFPQHCCVPVTSL

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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