NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13410.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13410.1 Public Homo sapiens 20 PREX1 24 110 108 CCDS HistoryNCBI Gene:57580Re-query CCDS DB by CCDS ID:13410.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13410.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371941.4 ENSP00000361009.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371941.4Link to Ensembl Protein Viewer:ENSP00000361009.3Re-query CCDS DB by Nucleotide ID:ENST00000371941Re-query CCDS DB by Protein ID:ENSP00000361009
Original member Current member NCBI NM_020820.4 NP_065871.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020820.4Link to Protein Sequence:NP_065871.3Re-query CCDS DB by Nucleotide ID:NM_020820Re-query CCDS DB by Protein ID:NP_065871Link to BLAST:NP_065871.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065871.3 1659 Q8TCU6-1 1659 100% 0 0

Chromosomal Locations for CCDS 13410.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 48625885 48625927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48627548 48627615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48627861 48627963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48629449 48629621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48630728 48630794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48632277 48632391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48632496 48632639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48634676 48634775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48636463 48636683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48637711 48637752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48639766 48639894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48642168 48642258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48642407 48642489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48644409 48644497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48645851 48646057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48649300 48649576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48649996 48650206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48650894 48651055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48651396 48651583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48652586 48652706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48653361 48653497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48655290 48655375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48657040 48657188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48658136 48658228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48659919 48660061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48666283 48666355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48676193 48676268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48679360 48679409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48679651 48679754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48681235 48681335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48688657 48688804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48690947 48691096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48692672 48692790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48700753 48700886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48708260 48708421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48726290 48726391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48734546 48734650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48745025 48745147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48747809 48747880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48827642 48827860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4980 nt):
ATGGAGGCGCCCAGCGGCAGCGAGCCCGGCGGCGACGGGGCCGGGGACTGCGCCCACCCGGACCCCCGGG
CCCCTGGCGCCGCGGCGCCCAGCTCCGGCCCCGGCCCGTGCGCGGCCGCCCGGGAGTCCGAGCGCCAGCT
GCGCCTCCGCCTCTGCGTCCTCAACGAGATCTTGGGCACCGAGAGGGACTACGTGGGCACCTTGCGCTTC
TTGCAGTCGGCATTCCTGCATCGCATCCGGCAGAACGTGGCCGACTCAGTGGAGAAGGGCCTCACGGAGG
AGAATGTCAAGGTCCTGTTCTCGAACATCGAAGACATCCTGGAAGTTCATAAGGATTTCTTGGCCGCCTT
GGAGTATTGTTTACACCCGGAGCCGCAGTCTCAGCATGAACTTGGGAATGTTTTCTTAAAATTCAAGGAC
AAGTTCTGCGTGTACGAGGAGTATTGCAGCAACCATGAGAAAGCCCTGAGGCTGCTGGTGGAGCTGAACA
AGATCCCTACCGTGCGCGCCTTCCTTTTGAGCTGCATGCTTCTGGGAGGCCGGAAGACCACGGACATCCC
TTTGGAAGGCTACCTGTTGTCTCCGATCCAGAGGATCTGCAAGTACCCGCTCCTCCTTAAGGAGCTGGCC
AAGAGGACTCCCGGCAAGCACCCAGACCACCCCGCGGTCCAGAGTGCCCTGCAGGCCATGAAGACCGTTT
GCTCCAACATCAATGAGACCAAGCGGCAGATGGAGAAGCTGGAAGCCCTGGAGCAGCTGCAGTCCCACAT
CGAAGGCTGGGAGGGTTCCAACCTCACAGACATCTGCACTCAGCTCCTCCTGCAAGGGACTTTGTTAAAG
ATCTCTGCGGGCAACATCCAGGAAAGGGCCTTCTTCCTCTTCGACAACCTTCTCGTCTACTGCAAGCGGA
AATCCAGGGTCACCGGGAGCAAGAAGTCCACCAAGAGGACCAAATCCATCAACGGCTCCCTCTACATCTT
CAGGGGTCGAATCAACACTGAAGTCATGGAGGTGGAGAATGTGGAAGATGGGACAGCGGATTACCATAGC
AACGGCTATACCGTCACCAACGGCTGGAAGATCCACAACACGGCCAAGAATAAGTGGTTTGTCTGCATGG
CCAAGACGGCAGAGGAGAAGCAGAAGTGGCTGGATGCCATCATCCGCGAGCGGGAGCAGCGCGAGAGCCT
GAAGCTGGGCATGGAGCGTGATGCCTACGTCATGATTGCGGAGAAGGGGGAGAAGCTGTACCACATGATG
ATGAACAAGAAGGTGAACCTCATCAAGGACCGCCGGAGAAAGCTGAGCACTGTCCCCAAGTGCTTTCTTG
GCAATGAGTTCGTTGCCTGGCTCCTAGAAATTGGTGAAATCAGCAAGACGGAAGAAGGAGTCAACTTGGG
CCAAGCCCTGTTGGAGAATGGCATCATCCACCATGTTTCCGACAAGCACCAGTTCAAGAATGAGCAGGTG
ATGTATCGCTTCCGCTACGACGATGGCACCTACAAGGCCCGAAGTGAGCTGGAGGACATCATGTCCAAGG
GTGTGAGGCTTTACTGCCGTCTTCACAGCCTCTACACCCCGGTGATCAAAGACCGTGATTACCACCTGAA
GACCTACAAGTCAGTGCTTCCCGGGAGCAAGCTGGTGGACTGGCTGCTGGCTCAGGGAGACTGCCAGACT
CGGGAGGAGGCAGTGGCGCTCGGCGTGGGTCTGTGCAACAATGGCTTCATGCACCACGTGCTGGAGAAGA
GCGAGTTCAGGGATGAGTCCCAGTACTTCCGCTTTCATGCTGACGAGGAGATGGAGGGGACCAGCAGCAA
GAACAAACAGCTTCGCAACGACTTCAAGCTGGTGGAGAACATTCTGGCCAAGCGCCTGCTGATCCTGCCC
CAGGAGGAGGACTATGGCTTTGACATCGAGGAGAAGAACAAGGCTGTGGTGGTGAAGTCCGTCCAGAGGG
GCTCGCTGGCTGAGGTGGCTGGCCTGCAGGTGGGGAGGAAGATCTACTCCATCAATGAGGACCTGGTGTT
CCTGCGGCCGTTTTCAGAGGTGGAGTCCATCCTCAACCAGTCCTTCTGCTCCCGCCGCCCTCTGCGCCTC
CTGGTGGCCACGAAGGCCAAAGAGATCATCAAAATCCCCGACCAGCCGGACACACTGTGCTTCCAGATTC
GTGGAGCTGCCCCACCGTACGTCTATGCTGTGGGGAGAGGCTCTGAGGCCATGGCTGCAGGGCTCTGTGC
TGGTCAGTGCATTCTGAAGGTCAATGGCAGCAACGTGATGAACGATGGTGCCCCTGAGGTCCTGGAGCAC
TTCCAGGCATTCCGGAGTCGGCGCGAAGAGGCCCTGGGCCTGTACCAGTGGATCTACCACACCCATGAGG
ATGCCCAGGAAGCACGAGCCAGTCAGGAGGCCTCCACTGAGGACCCCAGTGGCGAGCAGGCCCAGGAGGA
AGACCAGGCTGATTCAGCCTTCCCACTGCTGTCCCTGGGTCCCCGGCTGAGCCTGTGTGAGGACAGCCCC
ATGGTCACCCTGACTGTGGACAACGTGCACCTGGAACACGGCGTGGTGTATGAGTATGTGAGCACGGCAG
GCGTCAGGTGCCATGTGCTGGAGAAGATCGTGGAGCCCCGCGGCTGCTTCGGCCTCACCGCCAAGATCCT
CGAGGCCTTTGCTGCCAATGACAGCGTCTTCGTGGAGAACTGCAGGCGGCTCATGGCCCTGAGCAGCGCC
ATCGTGACCATGCCCCACTTTGAGTTCCGCAACATCTGTGACACCAAGCTGGAGAGCATTGGCCAGAGGA
TTGCCTGCTACCAGGAGTTTGCAGCCCAACTGAAGAGCAGGGTCAGCCCACCCTTCAAACAAGCCCCCCT
GGAGCCCCACCCGCTGTGTGGCCTGGACTTCTGCCCCACCAATTGCCACATCAACCTCATGGAAGTGTCC
TACCCCAAGACCACCCCCTCAGTGGGCAGGTCCTTCAGCATCCGCTTTGGACGCAAACCCTCCCTCATCG
GCCTTGACCCGGAGCAAGGCCACCTGAACCCCATGTCGTACACCCAGCACTGCATCACCACCATGGCTGC
TCCCTCCTGGAAGTGCTTGCCTGCTGCAGAGGGTGATCCCCAAGGCCAGGGTCTCCATGATGGCAGCTTC
GGGCCAGCCAGTGGGACCCTTGGTCAGGAAGACCGGGGCCTCAGCTTCCTACTCAAGCAGGAGGACCGTG
AGATCCAGGATGCCTACCTGCAGCTCTTCACCAAGCTGGATGTGGCCCTGAAGGAGATGAAGCAATATGT
CACCCAGATCAACAGGCTGCTGTCCACCATCACAGAGCCCACCTCGGGTGGGTCCTGCGACGCATCCTTG
GCTGAGGAGGCCTCCTCCCTGCCCCTGGTCAGTGAAGAGAGCGAGATGGACAGGAGTGACCATGGGGGCA
TCAAGAAGGTGTGCTTCAAGGTGGCCGAGGAGGACCAGGAGGACTCAGGCCACGACACCATGAGTTATCG
CGACTCCTACAGCGAGTGTAACAGCAATCGAGACTCGGTCCTGTCCTACACCAGCGTGAGAAGTAACAGC
TCCTACTTGGGCAGCGACGAGATGGGGTCTGGAGATGAGCTGCCCTGTGACATGCGGATCCCATCTGACA
AGCAGGACAAGCTTCATGGCTGCCTGGAGCACCTCTTTAACCAGGTGGACTCCATCAATGCTCTCCTCAA
GGGGCCAGTCATGAGCCGGGCTTTCGAAGAGACCAAGCATTTCCCTATGAACCACAGCTTACAAGAGTTT
AAACAGAAAGAAGAGTGTACAATCCGTGGCCGGAGCCTGATCCAGATTAGCATCCAGGAGGACCCCTGGA
ACCTCCCCAACTCCATCAAGACCCTGGTGGACAACATTCAGAGATATGTGGAAGATGGGAAGAACCAGCT
GCTCCTGGCCTTGCTGAAGTGCACAGACACGGAGCTGCAGCTGCGCAGAGACGCGATCTTCTGCCAGGCC
CTGGTGGCCGCCGTGTGCACCTTCTCCAAGCAGCTGCTGGCGGCCCTGGGCTACCGCTACAACAACAATG
GCGAGTACGAGGAGAGCAGCCGCGACGCCAGCCGCAAGTGGCTGGAGCAGGTGGCGGCCACGGGCGTCCT
GCTGCACTGCCAGTCCCTGCTCTCGCCAGCCACAGTGAAGGAGGAACGGACCATGCTGGAGGACATCTGG
GTGACGCTGTCAGAGCTGGACAATGTCACCTTCTCCTTTAAGCAGCTGGACGAGAACTATGTGGCCAACA
CCAACGTCTTCTACCACATTGAGGGCAGCCGGCAGGCGCTGAAGGTCATCTTCTACCTCGACAGCTACCA
CTTCTCCAAGCTGCCCTCCCGCCTGGAGGGTGGGGCCAGCCTGAGGCTGCACACAGCGCTGTTCACGAAA
GTGCTGGAGAACGTGGAGGGGCTGCCTTCTCCAGGCAGCCAGGCCGCGGAGGATTTGCAGCAGGACATCA
ACGCGCAGTCCCTGGAGAAAGTTCAGCAGTATTACCGCAAACTCAGGGCATTTTACCTGGAGCGGTCTAA
CCTGCCCACGGATGCCAGCACCACGGCGGTAAAGATAGACCAGCTGATCCGCCCCATCAATGCCCTGGAT
GAGCTCTGCCGCCTCATGAAGTCCTTTGTCCACCCAAAGCCTGGTGCTGCTGGGAGTGTGGGCGCCGGCC
TCATCCCCATCTCCTCGGAGCTCTGCTACCGCCTGGGGGCCTGCCAGATGGTCATGTGTGGCACAGGCAT
GCAGAGGAGCACCCTGAGCGTGTCCCTGGAGCAGGCGGCCATCTTGGCACGGAGCCACGGGTTGCTGCCC
AAGTGCATCATGCAGGCCACGGACATCATGCGGAAGCAGGGCCCAAGGGTGGAGATTCTGGCCAAAAACC
TGCGAGTCAAGGACCAGATGCCCCAGGGTGCTCCGCGCCTCTACCGCCTCTGCCAGCCGCCGGTGGATGG
GGACCTCTGA

Translation (1659 aa):
MEAPSGSEPGGDGAGDCAHPDPRAPGAAAPSSGPGPCAAARESERQLRLRLCVLNEILGTERDYVGTLRF
LQSAFLHRIRQNVADSVEKGLTEENVKVLFSNIEDILEVHKDFLAALEYCLHPEPQSQHELGNVFLKFKD
KFCVYEEYCSNHEKALRLLVELNKIPTVRAFLLSCMLLGGRKTTDIPLEGYLLSPIQRICKYPLLLKELA
KRTPGKHPDHPAVQSALQAMKTVCSNINETKRQMEKLEALEQLQSHIEGWEGSNLTDICTQLLLQGTLLK
ISAGNIQERAFFLFDNLLVYCKRKSRVTGSKKSTKRTKSINGSLYIFRGRINTEVMEVENVEDGTADYHS
NGYTVTNGWKIHNTAKNKWFVCMAKTAEEKQKWLDAIIREREQRESLKLGMERDAYVMIAEKGEKLYHMM
MNKKVNLIKDRRRKLSTVPKCFLGNEFVAWLLEIGEISKTEEGVNLGQALLENGIIHHVSDKHQFKNEQV
MYRFRYDDGTYKARSELEDIMSKGVRLYCRLHSLYTPVIKDRDYHLKTYKSVLPGSKLVDWLLAQGDCQT
REEAVALGVGLCNNGFMHHVLEKSEFRDESQYFRFHADEEMEGTSSKNKQLRNDFKLVENILAKRLLILP
QEEDYGFDIEEKNKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRL
LVATKAKEIIKIPDQPDTLCFQIRGAAPPYVYAVGRGSEAMAAGLCAGQCILKVNGSNVMNDGAPEVLEH
FQAFRSRREEALGLYQWIYHTHEDAQEARASQEASTEDPSGEQAQEEDQADSAFPLLSLGPRLSLCEDSP
MVTLTVDNVHLEHGVVYEYVSTAGVRCHVLEKIVEPRGCFGLTAKILEAFAANDSVFVENCRRLMALSSA
IVTMPHFEFRNICDTKLESIGQRIACYQEFAAQLKSRVSPPFKQAPLEPHPLCGLDFCPTNCHINLMEVS
YPKTTPSVGRSFSIRFGRKPSLIGLDPEQGHLNPMSYTQHCITTMAAPSWKCLPAAEGDPQGQGLHDGSF
GPASGTLGQEDRGLSFLLKQEDREIQDAYLQLFTKLDVALKEMKQYVTQINRLLSTITEPTSGGSCDASL
AEEASSLPLVSEESEMDRSDHGGIKKVCFKVAEEDQEDSGHDTMSYRDSYSECNSNRDSVLSYTSVRSNS
SYLGSDEMGSGDELPCDMRIPSDKQDKLHGCLEHLFNQVDSINALLKGPVMSRAFEETKHFPMNHSLQEF
KQKEECTIRGRSLIQISIQEDPWNLPNSIKTLVDNIQRYVEDGKNQLLLALLKCTDTELQLRRDAIFCQA
LVAAVCTFSKQLLAALGYRYNNNGEYEESSRDASRKWLEQVAATGVLLHCQSLLSPATVKEERTMLEDIW
VTLSELDNVTFSFKQLDENYVANTNVFYHIEGSRQALKVIFYLDSYHFSKLPSRLEGGASLRLHTALFTK
VLENVEGLPSPGSQAAEDLQQDINAQSLEKVQQYYRKLRAFYLERSNLPTDASTTAVKIDQLIRPINALD
ELCRLMKSFVHPKPGAAGSVGAGLIPISSELCYRLGACQMVMCGTGMQRSTLSVSLEQAAILARSHGLLP
KCIMQATDIMRKQGPRVEILAKNLRVKDQMPQGAPRLYRLCQPPVDGDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH