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Report for CCDS6227.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6227.1 Public Homo sapiens 8 PAG1 24 110 108 CCDS HistoryNCBI Gene:55824Re-query CCDS DB by CCDS ID:6227.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6227.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000220597.4 ENSP00000220597.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000220597.4Link to Ensembl Protein Viewer:ENSP00000220597.3Re-query CCDS DB by Nucleotide ID:ENST00000220597Re-query CCDS DB by Protein ID:ENSP00000220597
Original member Current member NCBI NM_018440.4 NP_060910.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018440.4Link to Protein Sequence:NP_060910.3Re-query CCDS DB by Nucleotide ID:NM_018440Re-query CCDS DB by Protein ID:NP_060910Link to BLAST:NP_060910.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060910.3 432 Q9NWQ8 432 100% 0 0

Chromosomal Locations for CCDS 6227.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 80976544 80976906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80980435 80980494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80984776 80985377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80987370 80987466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80991479 80991530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80993103 80993227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGGGGCCCGCGGGGAGCCTGCTGGGCAGCGGACAGATGCAGATCACCCTGTGGGGAAGTCTGGCTGCTG
TCGCCATTTTCTTCGTCATCACCTTCCTCATCTTCCTGTGCTCTAGTTGTGACAGGGAAAAGAAGCCGCG
ACAGCATAGTGGGGACCATGAGAACCTGATGAACGTGCCTTCAGACAAGGAGATGTTCAGCCGTTCAGTT
ACTAGCCTGGCAACAGATGCTCCTGCCAGCAGTGAGCAGAATGGGGCACTCACCAATGGGGACATTCTTT
CAGAGGACAGTACTCTGACCTGCATGCAGCATTACGAGGAAGTCCAGACATCGGCCTCGGATCTGCTGGA
TTCCCAGGACAGCACAGGGAAACCAAAATGTCATCAGAGTCGGGAGCTGCCCAGAATCCCTCCCGAGAGC
GCAGTGGATACCATGCTCACGGCGAGAAGTGTGGACGGGGACCAGGGGCTGGGGATGGAAGGGCCCTATG
AAGTGCTCAAGGACAGCTCCTCCCAAGAAAACATGGTGGAGGACTGCTTGTATGAAACTGTGAAAGAGAT
CAAGGAGGTGGCTGCAGCTGCACACCTGGAGAAAGGCCACAGTGGCAAGGCAAAATCTACTTCTGCCTCG
AAAGAGCTCCCAGGGCCCCAGACTGAAGGCAAAGCTGAGTTTGCTGAATATGCCTCGGTGGACAGAAACA
AAAAATGTCGTCAAAGTGTTAATGTAGAGAGTATCCTTGGAAATTCATGTGATCCAGAAGAGGAGGCCCC
ACCACCTGTCCCTGTTAAGCTTCTGGACGAGAATGAAAACCTTCAGGAGAAGGAAGGGGGAGAGGCGGAA
GAGAGTGCCACAGACACGACCAGTGAAACTAACAAGAGATTTAGCTCATTGTCATACAAGTCTCGGGAAG
AAGACCCCACTCTCACAGAAGAAGAGATCTCAGCTATGTACTCATCAGTAAATAAACCTGGACAGTTAGT
GAATAAATCGGGGCAGTCGCTTACAGTTCCGGAGTCCACCTACACCTCCATTCAAGGGGACCCACAGAGG
TCACCCTCCTCCTGTAATGATCTCTATGCTACTGTTAAAGACTTCGAAAAAACTCCAAACAGCACACTTC
CACCAGCAGGGAGGCCCAGCGAGGAGCCAGAGCCTGATTATGAAGCGATACAGACTCTCAACAGAGAGGA
AGAAAAGGCCACCCTGGGGACCAATGGCCACCACGGTCTCGTCCCAAAGGAGAACGACTACGAGAGCATA
AGTGACTTGCAGCAAGGCAGAGATATTACCAGGCTCTAG

Translation (432 aa):
MGPAGSLLGSGQMQITLWGSLAAVAIFFVITFLIFLCSSCDREKKPRQHSGDHENLMNVPSDKEMFSRSV
TSLATDAPASSEQNGALTNGDILSEDSTLTCMQHYEEVQTSASDLLDSQDSTGKPKCHQSRELPRIPPES
AVDTMLTARSVDGDQGLGMEGPYEVLKDSSSQENMVEDCLYETVKEIKEVAAAAHLEKGHSGKAKSTSAS
KELPGPQTEGKAEFAEYASVDRNKKCRQSVNVESILGNSCDPEEEAPPPVPVKLLDENENLQEKEGGEAE
ESATDTTSETNKRFSSLSYKSREEDPTLTEEEISAMYSSVNKPGQLVNKSGQSLTVPESTYTSIQGDPQR
SPSSCNDLYATVKDFEKTPNSTLPPAGRPSEEPEPDYEAIQTLNREEEKATLGTNGHHGLVPKENDYESI
SDLQQGRDITRL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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