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Report for CCDS8145.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8145.1 Public Homo sapiens 11 CCDC87 24 110 108 CCDS HistoryNCBI Gene:55231Re-query CCDS DB by CCDS ID:8145.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8145.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333861.5 ENSP00000328487.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000333861.5Link to Ensembl Protein Viewer:ENSP00000328487.3Re-query CCDS DB by Nucleotide ID:ENST00000333861Re-query CCDS DB by Protein ID:ENSP00000328487
Original member Current member NCBI NM_018219.3 NP_060689.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018219.3Link to Protein Sequence:NP_060689.2Re-query CCDS DB by Nucleotide ID:NM_018219Re-query CCDS DB by Protein ID:NP_060689Link to BLAST:NP_060689.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060689.2 849 Q9NVE4 849 100% 0 0

Chromosomal Locations for CCDS 8145.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 66590466 66593015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2550 nt):
ATGATGGAGCCCCCGAAGCCCGAGCCTGAGCTCCAGCGGTTTTACCACCGGCTGCTGCGTCCGCTGTCGC
TCTTCCCCACTAGGACGACGTCCCCAGAGCCTCAGAAGCGCCCCCCGCAGGAGGGCCGGATTCTGCAGTC
CTTCCCTCTGGCGAAGCTGACGGTGGCGTCGCTGTGCAGCCAGGTGGCCAAGCTGCTGGCCGGCAGCGGG
ATAGCAGCGGGAGTGCCTCCTGAGGCCCGACTACGTCTCATCAAGGTCATCCTGGACGAGCTGAAGTGCA
GCTGGCGGGAGCCGCCCGCCGAACTTAGTCTGAGCCACAAAAACAACCAGAAGCTGCGGAAGCGGCTCGA
GGCCTACGTGCTGCTGAGCAGCGAGCAGCTCTTCTTGCGCTACCTGCACCTGCTGGTGACCATGTCGACT
CCCAGGGGGGTCTTCACTGAATCAGCCACCCTCACCCGGTTGGCCGCCAGCCTCGCCAGGGACTGCACAC
TCTTCCTTACTAGTCCCAACGTCTACCGTGGCCTGCTTGCCGACTTCCAGGCCCTGCTGAGGGCAGAGCA
GGCCTCTGGGGATGTGGACAAGCTGCACCCTGTCTGCCCCGCTGGGACGTTCAAGCTGTGCCCTATCCCC
TGGCCTCACAGCACTGGCTTCGCCCAAGTGCAGTGCTCTAACCTCAACCTGAACTACCTCATCCAACTCA
GCCGTCCACCAGAGTTTCTCAATGAGCCAGGAAGGATGGATCCAGTGAAGGAATTGAAGTCCATCCCTCG
GTTGAAGAGGAAAAAGCCTTTCCACTGGCTGCCCTCCATAGGAAAGAAGAGAGAAATCGACATCAGTTCC
TCACAGATGGTGTCGCTGCCCAGCTATCCTGTGGCCCCCACCAGCAGGGCTTCCCCCTCGCCTTTCTGCC
CTGAGCTCCGGAGAGGCCAATCCATGCCCTCCCTGCGTGAGGGCTGGAGGCTGGCAGATGAGTTGGGCCT
TCCTCCACTCCCATCTCGCCCCTTAACCCCGCTGGTCTTGGCTACAGAGAGCAAACCAGAGCTGACTGGG
CTCATCGTGGCTGAGGATCTGAAGCAGTTGATAAAGAAGATGAAGTTGGAGGGGACTCGCTACCCACCAC
TGGACTCAGGCCTGCCTCCTCTCCTGGGGGTTGTGACCCGTCACCCAGCTGCAGGGCATCGCCTGGAGGA
GCTGGAGAAGATGTTGAGGAACCTCCAGGAGGAAGAAGCCTCTGGGCAGTGGGACCCCCAGCCCCCCAAA
TCCTTTCCACTTCACCCACAGCCAGTGACCATTACTTTGAAGCTTAGAAATGAGGTCGTGGTCCAGGCGG
CTGCCGTACGGGTCTCTGATAGAAACTTCTTAGACTCTTTCCACATTGAGGGGGCCGGAGCCCTGTATAA
CCATCTGGCTGGTGAACTGGATCCCAAAGCCATTGAAAAAATGGATATTGATAACTTTGTTGGCAGTACT
ACCAGGGAGGTCTACAAGGAGTTGATGAGCCATGTCTCTTCTGACCACTTACATTTTGATCAAGGGCCCC
TAGTTGAGCCTGCAGCAGATAAAGACTGGTCGACCTTCCTGTCCTCAGCCTTTCTACGTCAAGAAAAACA
GCCTCAAATCATCAACCCTGAGCTGGTTGGACTTTACTCCCAGAGAGCAAACACTTTACAGTCCAATACT
AAGAAGATGCCCTCCCTCCCATCACTCCAAGCTACCAAAAGCTGGGAGAAGTGGTCAAACAAGGCCTCCT
TGATGAACTCATGGAAAACCACCTTGTCTGTGGATGACTACTTCAAGTACCTCACCAACCATGAAACAGA
TTTCCTTCATGTCATCTTTCAAATGCATGAAGAAGAGGTTCCTGTGGAGATTGTGGCCCCTGCCAGAGAG
TCCCTAGAGATTCAGCACCCTCCCCCATTGCTAGAAGATGAAGAACCAGACTTTGTGCCAGGAGAGTGGG
ATTGGAACACTGTGCTAGAGCACAGGCTAGGAGCTGGGAAGACACCCCACCTGGGAGAACCCCACAAAAT
TCTGAGCCTGCAGAAGCATCTGGAACAACTGTGGTCTGTGCTTGAGGTCCCTGACAAGGACCAGGTGGAC
ATGACCATTAAATATAGCTCCAAAGCCCGCCTGAGGCAGCTGCCTTCATTGGTGAATGCCTGGGAGCGGG
CCCTGAAGCCCATTCAGCTGCGGGAGGCATTGCTGGCGAGACTAGAGTGGTTTGAGGGACAAGCTTCCAA
TCCCAACCGCTTCTTCAAAAAGACCAACTTGAGCTCCAGTCACTTCCTGGAGGAGAATCAGGTCCGAAGC
CATCTCCACAGGAAGCTCAACTTAATGGAGTCTTCTTTGGTTTCCCTCCTGGAGGAGATAGAGTTAATCT
TTGGCGAGCCAGTGATCTTCAAGGGGCGGCCCTACCTGGACAAGATGAAGAGTGACAAAGTGGAGATGCT
CTATTGGCTGCAACAGCAGCGGCGGGTTCGCCACCTGGTCTCGGCCCTGAAGGATCCCCACCAGTCAACC
CTGTTCAGGAGCTCAGCAGCCAGCCTTTAG

Translation (849 aa):
MMEPPKPEPELQRFYHRLLRPLSLFPTRTTSPEPQKRPPQEGRILQSFPLAKLTVASLCSQVAKLLAGSG
IAAGVPPEARLRLIKVILDELKCSWREPPAELSLSHKNNQKLRKRLEAYVLLSSEQLFLRYLHLLVTMST
PRGVFTESATLTRLAASLARDCTLFLTSPNVYRGLLADFQALLRAEQASGDVDKLHPVCPAGTFKLCPIP
WPHSTGFAQVQCSNLNLNYLIQLSRPPEFLNEPGRMDPVKELKSIPRLKRKKPFHWLPSIGKKREIDISS
SQMVSLPSYPVAPTSRASPSPFCPELRRGQSMPSLREGWRLADELGLPPLPSRPLTPLVLATESKPELTG
LIVAEDLKQLIKKMKLEGTRYPPLDSGLPPLLGVVTRHPAAGHRLEELEKMLRNLQEEEASGQWDPQPPK
SFPLHPQPVTITLKLRNEVVVQAAAVRVSDRNFLDSFHIEGAGALYNHLAGELDPKAIEKMDIDNFVGST
TREVYKELMSHVSSDHLHFDQGPLVEPAADKDWSTFLSSAFLRQEKQPQIINPELVGLYSQRANTLQSNT
KKMPSLPSLQATKSWEKWSNKASLMNSWKTTLSVDDYFKYLTNHETDFLHVIFQMHEEEVPVEIVAPARE
SLEIQHPPPLLEDEEPDFVPGEWDWNTVLEHRLGAGKTPHLGEPHKILSLQKHLEQLWSVLEVPDKDQVD
MTIKYSSKARLRQLPSLVNAWERALKPIQLREALLARLEWFEGQASNPNRFFKKTNLSSSHFLEENQVRS
HLHRKLNLMESSLVSLLEEIELIFGEPVIFKGRPYLDKMKSDKVEMLYWLQQQRRVRHLVSALKDPHQST
LFRSSAASL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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