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Report for CCDS26897.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26897.1 Public Mus musculus 14 Sfmbt1 23 108 98 CCDS HistoryNCBI Gene:54650Re-query CCDS DB by CCDS ID:26897.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26897.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054230.11 ENSMUSP00000056744.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054230.11Link to Ensembl Protein Viewer:ENSMUSP00000056744.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000054230Re-query CCDS DB by Protein ID:ENSMUSP00000056744
Original member Current member EBI ENSMUST00000112184.9 ENSMUSP00000107802.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112184.9Link to Ensembl Protein Viewer:ENSMUSP00000107802.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112184Re-query CCDS DB by Protein ID:ENSMUSP00000107802
Original member Current member EBI ENSMUST00000228006.1 ENSMUSP00000153861.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228006.1Link to Ensembl Protein Viewer:ENSMUSP00000153861.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228006Re-query CCDS DB by Protein ID:ENSMUSP00000153861
Original member Current member NCBI NM_001166531.1 NP_001160003.1 Accepted alive Link to Nucleotide Sequence:NM_001166531.1Link to Protein Sequence:NP_001160003.1Re-query CCDS DB by Nucleotide ID:NM_001166531Re-query CCDS DB by Protein ID:NP_001160003Link to BLAST:NP_001160003.1
Original member Current member NCBI NM_001166532.1 NP_001160004.1 Accepted alive Link to Nucleotide Sequence:NM_001166532.1Link to Protein Sequence:NP_001160004.1Re-query CCDS DB by Nucleotide ID:NM_001166532Re-query CCDS DB by Protein ID:NP_001160004Link to BLAST:NP_001160004.1
Original member Current member NCBI NM_019460.2 NP_062333.1 Accepted alive Link to Nucleotide Sequence:NM_019460.2Link to Protein Sequence:NP_062333.1Re-query CCDS DB by Nucleotide ID:NM_019460Re-query CCDS DB by Protein ID:NP_062333Link to BLAST:NP_062333.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001160003.1 863 Q9JMD1 863 100% 0 0
NP_001160004.1 863 Q9JMD1 863 100% 0 0
NP_062333.1 863 Q9JMD1 863 100% 0 0

Chromosomal Locations for CCDS 26897.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 30766074 30766101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30769799 30769893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30773885 30774125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30777904 30777992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30783943 30784189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30784701 30784789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30785814 30785915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30787457 30787607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30790734 30790816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30796326 30796452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30797576 30797689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30799741 30799783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30801858 30801919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30802532 30802671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30810296 30810405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30811389 30811564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30815074 30815252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30815408 30815653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30816748 30816876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30817708 30817848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2592 nt):
ATGAGCGGGGAGCAGCAGCTTGATGCAGATCTTGGGTCTGGTGTAGAAGTAGAAGAATTCAGCTGGGAAG
ATTATCTAGAAGAGACAGGCTCCACCACAGTTCCCTACGCATCGTTTAAACATGTGGATATACGTTTGCA
AAATGGATTTGCTCCTGGGATGAAGCTGGAGGTAGCTCTGAAAAATGACCCTGAGACTTATTGGGTTGCC
ACCATCATCACCGCCTGTGAGCAGTTGCTCCTGCTTCGTTATGAAGGCTATGGGGAAGACCGAAAAGCAG
ACTTCTGGTGTGACATCAGGAAAGCTGGCCTCTACCCCATTGGGTGGTGTCAGCAGAACAAGAAGACCCT
CGAAGCTCCAGAAGGCATCAGAGATAAAGTGTCTGATTGGAATGCATTCCTACAGCAGACCCTGATAGGA
GCCTGTGGTCCTCCCGTGTCTCTGCTAGAGGGCCTCCGTAATGGAAGGAATCCTTTAGATCTCATTGCTC
CAGGGTCCAAACTAGAATGCCAGGATTTTCGGGACTCTTTAAGCACTTGGCTTGTTACTGTTGTGGAGAA
CATTGGGGGACGGTTGAAGCTGCGGTATGAAGGCCTTGAGAGCCGTGACGGTTTTGAACACTGGTTGTAT
TACTTAGATCCATTTCTTCATCACATTGGTTGGGCTGCTCAGCAAGGATGTGACCTTCAGCCCCCATTAG
CCATCAAACATCTGAAGAGTGAAGCTGACTGGCAAGAGATTTTGGCCAAAGTGAAAGAGGAAGAGCCATT
ACCCTCTTACTTATTTAAGGATAAGCAAGTTATTGGAACCCATGAATTTTCTATAAACATGAAGTTGGAA
GCTGTGGACCCGTGGTCTCCTTTTGGGATTTCTCCTGCAACGATTGCTAAGGTGTTTGATGATAAGTACT
TTCTAGTGGAAATGGATGACCTTCGGCCAGAAGACCATACAAGGCGATCATTTGTGTGCCATGCTAACAG
TCCTGGTATCTTTCCTGTGCAGTGGAGTCTAAAGAATGGTTTACATATCAATCCTCCTCCAGGCTTCCGG
AGCCAGGACTTTGACTGGGCCGACTACCTCAAGCAGTGTGGGGCTGAAGCTGCTCCCCAGAAGTGCTTCC
CGCAGTCAATTTCTGAGCACCAGTTTAAGGAGAACATGAAACTGGAGGCAGTGAACCCTCTTTTCCCTGA
AGAAGTGTGCATTGCCACCGTTACTGCAGTGAGAGGCTCGTACCTGTGGCTCCAGCTAGAAGGTTCTAAG
AAGCCTGTACCCGAATTTATTGTAAGTGCAGAGTCGATGAATATATTTCCTTTGGGCTGGTGTGAAACCA
ATGGCCATCCTCTCAGTACTCCTCGCCGGGCACGAGGGCATAAACTGAGGAAAATCGCAGTGGTTCAACC
AGAAAAACAAATACTGTCTTCAAGAACTGTCCACGAGGGCCTGAAGAATCAGCTGAACTCTACCCACTCA
GTGATGATCAATGGAAAATACTGTTGTCCAAAGATATACTTCAACCACCGTTGCTTCTCAGGGCCATATC
TTAATAAAGGAAGAATTGCTGAGCTGCCTCAATGTGTGGGACCTGGGAACTGCGTTCTGGTACTTAGAGA
GGTTCTTACTTTGCTTATCAACGCAGCATACAAACCCAGCCGCGTCCTCCGTGAGCTCCAGCTGGACAAA
GACTCTGTGTGGCACGGATGTGGGGAAGTCCTAAAGGCCAAATATAAAGGAAAGAGTTACCGAGCTACTG
TTGAGATAGTGAGAACAGCAGACCGAGTGACTGAATTCTGCCGGCAAACATGCATCAAGCTGGAATGTTG
TCCCAACCTCTTTGGTCCACGCATGGTTCTGGATACATGTTCTGAGAATTGCTCTGTCCTTACAAAGACC
AAATACACGCACTATTATGGAAAGAAGAAAAATAAGAGAATTGGGAGGCCACCCGGTGGGCATAGTAATT
TATCTTGTGCCCTGAAAAAAAGCAGTAAGAGGAGAAAAAGGCGGAAGAATATTTTTGTTCATAAGAAGAA
GCGTTCTTCTGCATCTGTTGACAATACCCCGGTGGGCTCACCCCAGGGAAGTGGGGGTGAAGATGAGGAG
GATGCAGATGATGGAGACGAAGACTCCCTGACTGAGGGCAGTACATCCGAGCAGCAGGAGGAGTTGCAGG
AGGAGTCTGAGGTGTCAGAGAAAAAATCTAGCTCCTCGTCTCCCACCCAGAGTGAGACGCCCACCCCCTT
ACCCCCAGACACGCAGACCAACAAGAGAGATGCCCAGACCTCCTCCGTCTCAGACGATGAAAACAAGCCT
CCTTCACCAAAGGAAATAAGGATTGAAGTTGATGAAAGGCTTCACCTGGACAGTAACCCACTGAAGTGGA
GTGTGGCCGATGTCGTGCGGTTCATCAGGTCCACTGACTGTGCTCCGTTGGCAAGAATATTCCTTGATCA
GGAAATCGACGGGCAGGCCCTTTTGCTCCTTACCCTTCCCACTGTTCAAGAGTGCATGGACTTAAAGTTG
GGCCCCGCCATCAAGCTTTGCCATCACATAGAGAGAATCAAGTTTGCTTTTTATGAGCAGTTTGCCAACT
GA

Translation (863 aa):
MSGEQQLDADLGSGVEVEEFSWEDYLEETGSTTVPYASFKHVDIRLQNGFAPGMKLEVALKNDPETYWVA
TIITACEQLLLLRYEGYGEDRKADFWCDIRKAGLYPIGWCQQNKKTLEAPEGIRDKVSDWNAFLQQTLIG
ACGPPVSLLEGLRNGRNPLDLIAPGSKLECQDFRDSLSTWLVTVVENIGGRLKLRYEGLESRDGFEHWLY
YLDPFLHHIGWAAQQGCDLQPPLAIKHLKSEADWQEILAKVKEEEPLPSYLFKDKQVIGTHEFSINMKLE
AVDPWSPFGISPATIAKVFDDKYFLVEMDDLRPEDHTRRSFVCHANSPGIFPVQWSLKNGLHINPPPGFR
SQDFDWADYLKQCGAEAAPQKCFPQSISEHQFKENMKLEAVNPLFPEEVCIATVTAVRGSYLWLQLEGSK
KPVPEFIVSAESMNIFPLGWCETNGHPLSTPRRARGHKLRKIAVVQPEKQILSSRTVHEGLKNQLNSTHS
VMINGKYCCPKIYFNHRCFSGPYLNKGRIAELPQCVGPGNCVLVLREVLTLLINAAYKPSRVLRELQLDK
DSVWHGCGEVLKAKYKGKSYRATVEIVRTADRVTEFCRQTCIKLECCPNLFGPRMVLDTCSENCSVLTKT
KYTHYYGKKKNKRIGRPPGGHSNLSCALKKSSKRRKRRKNIFVHKKKRSSASVDNTPVGSPQGSGGEDEE
DADDGDEDSLTEGSTSEQQEELQEESEVSEKKSSSSSPTQSETPTPLPPDTQTNKRDAQTSSVSDDENKP
PSPKEIRIEVDERLHLDSNPLKWSVADVVRFIRSTDCAPLARIFLDQEIDGQALLLLTLPTVQECMDLKL
GPAIKLCHHIERIKFAFYEQFAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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