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Report for CCDS26277.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26277.1 Public Mus musculus 13 Zkscan4 23 108 98 CCDS HistoryNCBI Gene:544922Re-query CCDS DB by CCDS ID:26277.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26277.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062609.5 ENSMUSP00000054604.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062609.5Link to Ensembl Protein Viewer:ENSMUSP00000054604.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000062609Re-query CCDS DB by Protein ID:ENSMUSP00000054604
Original member Current member NCBI NM_001039115.2 NP_001034204.1 Accepted alive Link to Nucleotide Sequence:NM_001039115.2Link to Protein Sequence:NP_001034204.1Re-query CCDS DB by Nucleotide ID:NM_001039115Re-query CCDS DB by Protein ID:NP_001034204Link to BLAST:NP_001034204.1

Chromosomal Locations for CCDS 26277.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 21479093 21479509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 21481274 21481430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 21483868 21484736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGGCTAGAGAACCCGGAACGTCCGCAGCCCTAAACGCTCGGTCTGCAGAAGAGGGCACTGGGCTTCTAG
TGGTGAAAGTGGAACAGGAAGAGGCCTCCCCCTTGGCAGAGGAGACCAGTTGGCTGGGCAGTCCTGGGCC
TGACCGCTCCCGCCAGCGCTTCCGTGCTTTCCGCTACCCAGAGGCAGCCGGACCCCGGCAGGCGCTGAGC
CGGCTCCGCGAGCTCTGCAGACAGTGGCTGCGGCCAGACATGCACAGCAAGGAGCAGATCCTGGAGCTGC
TGGTGCTGGAGCAGTTCCTGACCATCCTGCCAGGGGAGCTGCAGACCTGGGTGCGCGAGCAGCACCCCGA
CAGCGGGGAGGAGGTGGTGGCGCTGCTGGAGTACTTGGACAGGCAGCTGGATGACACACCTCCACAGGTT
TCAACGGGAGAATGGAGTCGCGAACTTCTCTGCTGCAAGGTGGCAGTGGTGACACCATCCCAGGACTCAC
AAAGTAGCCACTGCCAGGCAATGAAGTCACTCTTCAAGCACGAATCTCAGGAATCTTTGGAGTGTTCGCC
CTTACAGGCCAGAGGGCTGGAAATGAAGCCTGAGACCAGGGACTTGCCTCGAGCTGAAGAATACAGGGAC
CAAAAGCCTGAGCAGACAGTGTGCTTCCTGGGTGAAGACACTGTCCCGATTCCTACAGGTGCAGAAGCCA
GTGAGCAGGAAGGCAAGTTACAGACAGCACAGAAGAGTGCCACAGGAACCAGGCGGCACTTTTGCTGTGA
ATGTGGGAAGAGCTTTGCTCAGAGTTCAGGCTTGACCAAACACAAGAGAATCCACACAGGAGAGAAGCCC
TATGAATGTGAAGACTGTGGGAAGACCTTTATTGGGAGCTCTGCCCTTGTCATTCATCAGAGAGTTCACA
CTGGGGAGAAGCCATATGAGTGTGAAGAATGTGGCAAAGTCTTCAGTCACAGCTCCAACCTCATCAAGCA
CCAGAGAACCCACACTGGGGAAAAGCCCTACGAGTGTGATGACTGTGGGAAAACCTTCACTCAGAGCTGC
AGCCTCCTTGAACATCACAAAATTCACACTGGGGAGAAGCCATTCCAGTGCAACTTGTGTGGCAAAGCCT
TTAGGCGTAGCTCACATCTCCTGAGACATCAGCGGATCCATGGTGATAAAACTGCTCCAAAGCCTCTGCA
TGGAGAGGCCTGGGAAGGTCAGAGTCCGGTGGCAGGCCAGGGGGAAGATGTTGAAGCTCCTGAGACTTAC
CAGTGCAGTGAGTGTGAGAGAAGTTTCACTCGGAGGAGAAGCCTTCTTGAACATAAAAAAATCCACACGG
GTGAGAAACCCTACCAGTGTGATGCATGCGGGAAGGGCTTTACCCGAACTTCATACCTTGCTCAACATCA
GAGGAGCCACGTGGGGAAAAAATTGTCTCACAGTGATCTGTAG

Translation (480 aa):
MAREPGTSAALNARSAEEGTGLLVVKVEQEEASPLAEETSWLGSPGPDRSRQRFRAFRYPEAAGPRQALS
RLRELCRQWLRPDMHSKEQILELLVLEQFLTILPGELQTWVREQHPDSGEEVVALLEYLDRQLDDTPPQV
STGEWSRELLCCKVAVVTPSQDSQSSHCQAMKSLFKHESQESLECSPLQARGLEMKPETRDLPRAEEYRD
QKPEQTVCFLGEDTVPIPTGAEASEQEGKLQTAQKSATGTRRHFCCECGKSFAQSSGLTKHKRIHTGEKP
YECEDCGKTFIGSSALVIHQRVHTGEKPYECEECGKVFSHSSNLIKHQRTHTGEKPYECDDCGKTFTQSC
SLLEHHKIHTGEKPFQCNLCGKAFRRSSHLLRHQRIHGDKTAPKPLHGEAWEGQSPVAGQGEDVEAPETY
QCSECERSFTRRRSLLEHKKIHTGEKPYQCDACGKGFTRTSYLAQHQRSHVGKKLSHSDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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