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Report for CCDS52943.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52943.1 Public Mus musculus 9 Arpp21 23 108 98 CCDS HistoryNCBI Gene:74100Re-query CCDS DB by CCDS ID:52943.1Re-query CCDS DB by GeneID:74100See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52943.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159451.7 ENSMUSP00000125095.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159451.7Link to Ensembl Protein Viewer:ENSMUSP00000125095.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159451Re-query CCDS DB by Protein ID:ENSMUSP00000125095
Original member Current member NCBI NM_001177617.1 NP_001171088.1 Accepted alive Link to Nucleotide Sequence:NM_001177617.1Link to Protein Sequence:NP_001171088.1Re-query CCDS DB by Nucleotide ID:NM_001177617Re-query CCDS DB by Protein ID:NP_001171088Link to BLAST:NP_001171088.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171088.1 601 Q9DCB4-9 601 99.8336% 0 1

Chromosomal Locations for CCDS 52943.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 112116673 112116767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112119183 112119309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112124740 112125000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112127279 112127460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112136454 112136681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112143309 112143538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112176095 112176235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112176934 112176993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112177658 112177736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112179028 112179172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112183495 112183584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112184269 112184310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112185609 112185734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1806 nt):
ATGTCTGAGCAAGGAGGACTGACTCCGACCATACTGGAAGAAGGGCAGACGGAGCCAGAGTCTGCCCCAG
AAAATGGCATCCTCAAGTCAGAAAGTCTGGATGAGGAGGAGAAGCTGGAACTGCAGCGGCGACTGGCGGC
TCAGAACCAAGAGAGGAGAAAATCCAAGTCAGGAGCAGGCAAAGGGAAGCTGACCAGAAGTCTTGCTGTC
TGTGAAGAGTCTTCAGCTAGATCTGGAGGGGAAAGTCACCAGGATCAGGAATCAATTCACTTACAGCTTT
CCAGTTTCCCCAGCCTGCAAGAGGAGGATAAATCTAGGAAGGATGATTCTGAGAGAGAAAAAGAAAAGGA
TAAGAACAGAGAGAAACTCTCTGAGAGACCCAAGATCAGAATGTTATCAAAAGATTGCAGCCAAGAATAC
ACAGATTCTACAGGCATAGACTTACATGGGTTTCTAATTAACACGCTGAAGAACAATTCCAGGGACAGGA
TGATACTCTTGAAAATGGAGCAGGAAATGATTGATTTCATTGCTGACAGCAATAACCACTATAAAAAGTT
CCCCCAGATGTCATCCTATCAAAGGATGCTGGTCCATCGGGTGGCAGCGTACTTTGGATTGGACCACAAC
GTGGATCAAACTGGAAAATCTGTCATCATCAACAAGACCAGCAGCACCAGGATGGCTCACCGAGACAGCT
CAGGAAGAACTTCCGGGAGCCGGCAGAGCAGCTCAGAGACTGAGCTCAGGTGGCCAGACCACCAGCGGGC
TTGGAGCAGCACAGATTCGGACAGTTCCAACCGCAATCTGAAGCCCACCATGACCAAGACGGCAAGTTTT
GGGGGCATCACGGTGCTGACCAGGGGCGACAGCACGTCCAGTACCAGGAGTGCTGGGAAACTGTCCAAAA
CAGGTTCTGAGTCTTCCAGCAGTGCGGGCTCCTCAGGATCACTGTCCCGCACCCACCCACAGAGCACGGC
CCTGACCTCTAGCGTGGCAGCTGGTTCTCCTGGCTGTATGGCCTATTCAGAGAATGGAATGGGAGGCCAG
GTTCCTCCCAGCAGCACCAGCTACATCCTCCTCCCACTTGAAAGTGCGACTGGCATCCCACCCGGAAGCA
TCCTTCTTAATCCACACACAGGTCAGCCCTTTGTGAACCCGGATGGAACGCCTGCGATATACAACCCTCC
CGGAAGTCAGCAGACACTGCGTGGCACTGTTGGTGGGCAGCCCCAGCAACCTCCACAGCAGCAACCTTCG
CCTCAGCCTCAGCAGCAGGTCCAGGCATCACAGCCCCAGATGGCAGGGCCACTGGTCACTCAGAGAGAAG
AACTGGCTGCCCAGTTCAGCCAGCTGAGCATGAGCCGGCAGTCCTCGGGAGACACTCCTGAACCTCCCTC
TGGTACAGTCTACCCAGCCTCTCTCCTGCCACAAACGGCTCAGCCACAGAGTTATGTCATCACTTCTGCA
GGCCAGCAGCTCTCTACAGGGGGCTTCTCGGACTCTGGCCCGCCCATCTCCCAGCAGGTCCTGCAGGCCC
CGCCCTCTCCCCAGGGATTTGTACAGCAGCCTCCACCTGCACAGATGTCCGTCTATTACTACCCATCTGG
TCAGTACCCTACCTCAACCTCACAGCAGTACCGACCCCTCGCCTCAGTCCAGTACAGTGCTCAGCGGAGT
CAGCAAATACCACAGACCACACAGCAAGCAGGTTTGATGATTGCACCTGACACCTGGCCGACAGTCCCAG
CAGAGCTTGCCCTACAGAAAGTGAGTTTACTGTGGATTAGTGAAGGCAGATGGTAG

Translation (601 aa):
MSEQGGLTPTILEEGQTEPESAPENGILKSESLDEEEKLELQRRLAAQNQERRKSKSGAGKGKLTRSLAV
CEESSARSGGESHQDQESIHLQLSSFPSLQEEDKSRKDDSEREKEKDKNREKLSERPKIRMLSKDCSQEY
TDSTGIDLHGFLINTLKNNSRDRMILLKMEQEMIDFIADSNNHYKKFPQMSSYQRMLVHRVAAYFGLDHN
VDQTGKSVIINKTSSTRMAHRDSSGRTSGSRQSSSETELRWPDHQRAWSSTDSDSSNRNLKPTMTKTASF
GGITVLTRGDSTSSTRSAGKLSKTGSESSSSAGSSGSLSRTHPQSTALTSSVAAGSPGCMAYSENGMGGQ
VPPSSTSYILLPLESATGIPPGSILLNPHTGQPFVNPDGTPAIYNPPGSQQTLRGTVGGQPQQPPQQQPS
PQPQQQVQASQPQMAGPLVTQREELAAQFSQLSMSRQSSGDTPEPPSGTVYPASLLPQTAQPQSYVITSA
GQQLSTGGFSDSGPPISQQVLQAPPSPQGFVQQPPPAQMSVYYYPSGQYPTSTSQQYRPLASVQYSAQRS
QQIPQTTQQAGLMIAPDTWPTVPAELALQKVSLLWISEGRW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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