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Report for CCDS37143.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37143.1 Public Mus musculus 15 Cbx7 23 108 98 CCDS HistoryNCBI Gene:52609Re-query CCDS DB by CCDS ID:37143.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37143.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109615.7 ENSMUSP00000105244.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109615.7Link to Ensembl Protein Viewer:ENSMUSP00000105244.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109615Re-query CCDS DB by Protein ID:ENSMUSP00000105244
Original member Current member EBI ENSMUST00000109616.8 ENSMUSP00000105245.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109616.8Link to Ensembl Protein Viewer:ENSMUSP00000105245.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109616Re-query CCDS DB by Protein ID:ENSMUSP00000105245
Original member Current member NCBI NM_144811.3 NP_659060.1 Accepted alive Link to Nucleotide Sequence:NM_144811.3Link to Protein Sequence:NP_659060.1Re-query CCDS DB by Nucleotide ID:NM_144811Re-query CCDS DB by Protein ID:NP_659060Link to BLAST:NP_659060.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659060.1 158 Q8VDS3 158 100% 0 0

Chromosomal Locations for CCDS 37143.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 79918319 79918476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79918753 79918825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79921372 79921438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79923472 79923537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79930586 79930629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79932448 79932516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGGAGCTGTCAGCCATAGGCGAGCAGGTGTTTGCGGTGGAGAGCATCCGGAAGAAGCGCGTGCGGAAGG
GCAAAGTTGAATATCTGGTGAAGTGGAAAGGATGGCCCCCCAAGTATAGCACCTGGGAGCCAGAGGAGCA
CATCTTGGACCCTCGCCTTGTCATGGCCTACGAGGAGAAGGAGGAGAGAGACCGAGCCTCGGGGTATAGG
AAGAGAGGTCCGAAACCCAGGCGGCTTCTGCTACAGGAGTCAGCAGCCCCAGACGTTGTGCAGACCCCCG
GAGACTGGGAGCCTATGGAGCAAGCCCCCGAGGAGGAGGCAGAAGCAGACCTGACCAATGGGCCGCCTCC
CTGGACACCCACGCTCCCCTCAAGTGAAGTTACCGTGACTGACATCACCGCCAACTCCGTCACCGTCACC
TTCCGCGAGGCTCAAGCCGCCGAGGGCTTCTTCCGAGACCGCAACGAGAAGCTGTGA

Translation (158 aa):
MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKEERDRASGYR
KRGPKPRRLLLQESAAPDVVQTPGDWEPMEQAPEEEAEADLTNGPPPWTPTLPSSEVTVTDITANSVTVT
FREAQAAEGFFRDRNEKL


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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