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Report for CCDS20415.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20415.1 Public Mus musculus 6 Camk1 23 108 98 CCDS HistoryNCBI Gene:52163Re-query CCDS DB by CCDS ID:20415.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20415.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032409.14 ENSMUSP00000032409.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032409.14Link to Ensembl Protein Viewer:ENSMUSP00000032409.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000032409Re-query CCDS DB by Protein ID:ENSMUSP00000032409
Original member Current member NCBI NM_133926.2 NP_598687.1 Accepted alive Link to Nucleotide Sequence:NM_133926.2Link to Protein Sequence:NP_598687.1Re-query CCDS DB by Nucleotide ID:NM_133926Re-query CCDS DB by Protein ID:NP_598687Link to BLAST:NP_598687.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598687.1 374 Q91YS8 374 100% 0 0

Chromosomal Locations for CCDS 20415.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113334314 113334408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113334514 113334631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113336174 113336261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113336358 113336436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113337193 113337305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113338111 113338186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113338280 113338406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113339285 113339423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113339507 113339581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113340292 113340423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113341868 113341950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGCCAGGGGCAGTGGAAGGCCCCAGGTGGAAGCAGGCGGAAGACATTAGGGATATTTATGACTTCAGAG
ATGTTCTGGGCACGGGTGCCTTCTCAGAAGTGATCCTGGCAGAGGACAAGAGGACTCAGAAACTGGTGGC
CATCAAATGCATTGCCAAGAAAGCCCTGGAGGGCAAAGAAGGCAGCATGGAGAACGAGATTGCCGTCTTA
CACAAGATCAAGCACCCCAACATTGTAGCCCTGGATGACATCTATGAGAGTGGGGGCCACCTCTACCTCA
TCATGCAGCTGGTTTCAGGTGGAGAGCTGTTTGACCGAATTGTGGAGAAAGGATTCTACACGGAACGGGA
TGCCAGCCGCCTCATCTTCCAGGTGCTGGATGCTGTCAAGTACCTGCACGACCTGGGCATTGTGCACCGG
GATCTCAAGCCAGAGAACCTGCTGTACTACAGTCTGGATGAAGACTCCAAAATCATGATCTCTGACTTTG
GCCTCTCCAAGATGGAGGACCCAGGCAGTGTGCTCTCCACAGCCTGTGGGACTCCAGGATATGTGGCCCC
TGAGGTCCTGGCCCAGAAGCCCTACAGCAAGGCTGTGGATTGCTGGTCCATAGGAGTCATTGCCTATATA
CTGCTCTGTGGCTACCCACCCTTTTATGATGAAAATGATGCCAAACTCTTTGAACAGATTTTGAAGGCAG
AGTATGAGTTTGACTCTCCTTATTGGGACGACATCTCTGACTCTGCCAAAGATTTCATACGACATTTGAT
GGAGAAAGACCCGGAGAAGAGGTTTACCTGTGAGCAGGCCTTGCAGCACCCATGGATTGCAGGAGATACA
GCTCTGGATAAGAATATCCACCAGTCAGTGAGCGAGCAGATCAAGAAGAACTTTGCCAAGAGCAAGTGGA
AGCAAGCTTTCAATGCCACTGCTGTGGTTCGGCACATGAGGAAGCTGCAGCTGGGAACCAGTCAGGAGGG
GCAGGGGCAGACTGGCAGCCACGGGGAGCTGCTGACACCAACAGCTGGTGGGCCAGCAGCTGGCTGCTGC
TGCCGAGACTGCTGTGTGGAACCAGGCTCGGAACTGCCCCCTGCACCACCCCCAAGCTCTAGGGCCATGG
ATTGA

Translation (374 aa):
MPGAVEGPRWKQAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVL
HKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGIVHR
DLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYI
LLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQHPWIAGDT
ALDKNIHQSVSEQIKKNFAKSKWKQAFNATAVVRHMRKLQLGTSQEGQGQTGSHGELLTPTAGGPAAGCC
CRDCCVEPGSELPPAPPPSSRAMD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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