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Report for CCDS16585.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16585.1 Public Mus musculus 2 Knstrn 23 108 98 CCDS HistoryNCBI Gene:51944Re-query CCDS DB by CCDS ID:16585.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16585.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000134661.7 ENSMUSP00000115860.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000134661.7Link to Ensembl Protein Viewer:ENSMUSP00000115860.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000134661Re-query CCDS DB by Protein ID:ENSMUSP00000115860
Original member Current member NCBI NM_026412.3 NP_080688.2 Accepted alive Link to Nucleotide Sequence:NM_026412.3Link to Protein Sequence:NP_080688.2Re-query CCDS DB by Nucleotide ID:NM_026412Re-query CCDS DB by Protein ID:NP_080688Link to BLAST:NP_080688.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080688.2 312 Q9D9Z1 312 100% 0 0

Chromosomal Locations for CCDS 16585.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 118814101 118814309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118814401 118814492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118817864 118817990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118818835 118818882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118823420 118823525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118823693 118823786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118828959 118829014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118831553 118831627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118834000 118834131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGCGGCTCCCGAGGCCGAGGCACAAGAGACAGCCTTCCGTACAACAGGGCCGCCTACAGACTCGGAGC
CGCGCCCCTTCCCTCCCAGCTCCCGGAAGTTTCCTTTTGAAAGCGCGGCGGCAGACTCTAACGAGGACTG
GGCAGTTGCTGCGGAGCATTATTTGAAAGGGAGCGGAGAGAACGGCGGATGGGAGCAGCCGGCACCGGGG
GTCCAGCCAAGCCACCCGGCTACGATGGCCAGTGCTAAGACGGTGTGCGATGCGCAGCCTCACTCGATGC
CGAGCTGCGGCTTGCCCGCAGATACACAAACTCGAGCTACTTCTAAACTACCTGTTAAATCCAAAGAAGC
GGATTTGCTTAGACATCTTCATCCAGGAGGGCCAGAGCCTGATGTTACAAAAGTCACCAAATCGAGACGA
GAGAATGGGCAGGTGAAAGCGGCAGAGACTGCCAGCAGGAGGAACCTCAGAAACAGCTACAAACCGTTTA
ATAAGCAAAAACCGGAGGAGGAACTAAAGGATAAAAATGAGCTGCTGGAGGCTGTCAACAAGCAGTTACA
CCAGAAGCTGACAGAGACTCAGGGAGAGCTGAAGGACCTGACACAGAAAGTGGAGCTACTGGAGAAGTTT
CAGGATAACTGCTTAGCACTTTTGGAGAGCAAAGGTCTCAACCCAGGCCAAGAGACCCTGGCATCAAAGC
AGGAACCCACCACAGATCACACGGACTCCATGCTGCTGCTCGAAACTTTGAAAGACGAACTGAAGGTTTT
CAATGAAACCGCCAAGAAGCAGATGGAGGAGCTACAGGCCTTGAAGGTGAAGTTGAAGCTGAAAGAAGAG
GAGAGTGTCCAGTTCCTGGAACAGCAGACCTTATGTAAGGACGAAGCCAGTGACTTCACAATAATCCTAG
AGGAAATGGAGCAGCTCTTAGAAATGTAG

Translation (312 aa):
MAAPEAEAQETAFRTTGPPTDSEPRPFPPSSRKFPFESAAADSNEDWAVAAEHYLKGSGENGGWEQPAPG
VQPSHPATMASAKTVCDAQPHSMPSCGLPADTQTRATSKLPVKSKEADLLRHLHPGGPEPDVTKVTKSRR
ENGQVKAAETASRRNLRNSYKPFNKQKPEEELKDKNELLEAVNKQLHQKLTETQGELKDLTQKVELLEKF
QDNCLALLESKGLNPGQETLASKQEPTTDHTDSMLLLETLKDELKVFNETAKKQMEELQALKVKLKLKEE
ESVQFLEQQTLCKDEASDFTIILEEMEQLLEM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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