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Report for CCDS51824.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51824.1 Public Mus musculus 6 Exoc6b 23 108 98 CCDS HistoryNCBI Gene:75914Re-query CCDS DB by CCDS ID:51824.1Re-query CCDS DB by GeneID:75914See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51824.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160197.5 ENSMUSP00000125312.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160197.5Link to Ensembl Protein Viewer:ENSMUSP00000125312.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160197Re-query CCDS DB by Protein ID:ENSMUSP00000125312
Original member Current member NCBI NM_177077.2 NP_796051.2 Accepted alive Link to Nucleotide Sequence:NM_177077.2Link to Protein Sequence:NP_796051.2Re-query CCDS DB by Nucleotide ID:NM_177077Re-query CCDS DB by Protein ID:NP_796051Link to BLAST:NP_796051.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796051.2 810 A6H5Z3-1 810 100% 0 0

Chromosomal Locations for CCDS 51824.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 84621385 84621511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 84625125 84625237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 84746901 84746974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 84791241 84791382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 84835041 84835220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 84844009 84844143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 84848766 84848877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 84851851 84851960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 84853577 84853682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 84854701 84854798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 84855475 84855546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 84858388 84858508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 84860173 84860219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 84860635 84860718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 84890517 84890585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 84908113 84908289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 84989325 84989529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85003048 85003093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85003195 85003285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85004989 85005036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85011318 85011483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85069296 85069405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2433 nt):
ATGGAGCGGGCGAAGATGGCGGAGGAGAGCCTGGAGACGGCGGCGGAGCACGAGCGGATCCTGAGGGAGA
TCGAGAGCACAGACACGGCCTGCATCGGGCCCACGCTCAGGTCTGTCTATGATGGTGAGGAACATGGACG
ATTCATGGAGAAGCTAGAAACTCGTATCCGCAATCATGACAGAGAAATCGAGAAAATGTGCAACTTTCAC
TACCAGGGCTTTGTGGACTCTATTACTGAGCTGCTGAAAGTACGAGGAGAAGCCCAGAAACTCAAAAACC
AGGTGACGGACACTAATAGGAAACTGCAGCACGAGGGCAAGGAACTGGTAATAGCAATGGAGGAGCTGAA
GCAGTGTCGACTACAACAGAGAAATATTTCTGCCACTGTCGATAAGCTAATGCTGTGTCTTCCAGTCCTA
GAGATGTACAGCAAACTGAGGGACCAGATGAAAACCAAAAGGCATTATCCTGCACTGAAGACACTGGAGC
ATCTGGAACACACCTATCTGCCTCAAGTGAGCCACTATCGATTCTGTAAGGTGATGGTGGACAACATCCC
CAAGCTTCGGGAGGAAATAAAAGATGTTTCTATGTCTGATCTCAAAGACTTTCTGGAGAGCATCCGCAAG
CATTCAGACAAAATTGGAGAGACTGCCATGAAGCAAGCCCAACAGCAAAGAAACCTGGATAACATTGTCT
TGCAACAGCCTAGAATAGGTAGCAAAAGGAAATCTAAGAAAGATGTTTATACAATCTTTGATGCAGAGGT
GGAGAGCACAAGTCCAAAGTCGGAACAGGATTCGGGAATTCTGGATGTGGAAGACGAGGAAGATGATGAA
GAGGTACCTGGGGCTCAAGACTTGGTGGATTTCTCTCCTGTGTATCGGTGTCTACACATATATTCTGTCC
TGGGTGCCCGTGAAACATTTGAGAATTACTACCGAAAACAGAGGCGAAAACAGGCTCGTTTGGTACTCCA
GCCTCCGTCTAATATGCATGAAACTTTAGATGGCTACAGGAAGTATTTCAATCAAATTGTAGGCTTTTTT
GTGGTTGAAGATCACATTTTGCATACAACCCAGGGCTTAGTGAATAGAGCCTACATTGATGAACTGTGGG
AAATGGCCCTTTCAAAGACCATCGCAGCATTGCGTACCCACTCGTCCTACTGTTCTGATCCAAACCTCGT
GTTAGATTTGAAGAACCTCATTGTACTCTTTGCGGACACACTTCAGGTGTATGGTTTTCCTGTGAATCAG
CTTTTTGATATGTTGTTAGAAATCAGAGACCAGTACAGCGAGACTCTATTGAAGAAGTGGGCAGGGGTTT
TCAGAAATATACTTGATTCTGACAACTACAGTCCCATACCAGTAACAAGTGAAGAGACATATAAAAAAGT
CGTAGGACAATTCCCGTTTCAAGATATAGAACTGGAAAAGCAGCCATTTCCCAAAAAGTTTCCTTTCTCT
GAATTTGTGCCAAAAGTTTACAACCAGATTAAAGAATTTATCTACGCCTGCCTGAAGTTTTCAGAAGATC
TTCATCTAAGCTCCACTGAAGTCGATGACATGATCCGTAAGTCTACAAACTTGTTGCTGACCAGGACTCT
GAGCAACTCTCTGCAGAACGTCATTAAGAGGAAGAACATTGGCCTTACTGAGCTTGTCCAGATTATCATC
AATACAACACACTTGGAGAAGTCCTGTAAATACCTGGAGGAATTCATCACCAATATCACTAATGTCCTTC
CAGAGACGGTCCATACCACCAAGCTTTATGGTACCACAACTTTCAAGGATGCTAGACATGCAGCTGAAGA
AGAGATATATACAAACCTAAATCAGAAGATTGACCAGTTTCTGCAGCTGGCTGACTACGACTGGATGACT
GGAGACCTAGACAACAAAGCCAGTGATTACCTGGTAGACCTCATTGCCTTCCTCCGGAGCACCTTTGCTG
TGTTCACACACCTTCCTGGAAAGGTGGCTCAGACAGCATGTATGTCAGCTTGCAAGCATTTAGCCACATC
CTTGATGCAACTTTTGCTAGAAGCGGAAGTACGGCAGCTCACTTTGGGAGCATTGCAGCAGTTCAACCTG
GATGTCAGAGAATGTGAACAGTTTGCCAGATCCGGCCCGGTGCCTGGGTTCCAGGAGGACACGCTGCAGT
TGGCCTTCATCGACTTGAGACAACTATTGGACCTCTTTATTCAGTGGGATTGGTCCACATACCTTGCCGA
CTATGGACAGCCCAACTGCAAGTATCTCCGGGTGAACCCTGTGACAGCTCTGACCCTGCTTGAGAAGATG
AAAGATACTAGCCGCAAGAATAACATGTTTGCACAGTTCCGGAAAAATGAGCGAGATAAGCAGAAATTGA
TTGACACCGTGGCCAAGCAGCTCCGAGGACTCATCAGCAGCCACCACTCCTGA

Translation (810 aa):
MERAKMAEESLETAAEHERILREIESTDTACIGPTLRSVYDGEEHGRFMEKLETRIRNHDREIEKMCNFH
YQGFVDSITELLKVRGEAQKLKNQVTDTNRKLQHEGKELVIAMEELKQCRLQQRNISATVDKLMLCLPVL
EMYSKLRDQMKTKRHYPALKTLEHLEHTYLPQVSHYRFCKVMVDNIPKLREEIKDVSMSDLKDFLESIRK
HSDKIGETAMKQAQQQRNLDNIVLQQPRIGSKRKSKKDVYTIFDAEVESTSPKSEQDSGILDVEDEEDDE
EVPGAQDLVDFSPVYRCLHIYSVLGARETFENYYRKQRRKQARLVLQPPSNMHETLDGYRKYFNQIVGFF
VVEDHILHTTQGLVNRAYIDELWEMALSKTIAALRTHSSYCSDPNLVLDLKNLIVLFADTLQVYGFPVNQ
LFDMLLEIRDQYSETLLKKWAGVFRNILDSDNYSPIPVTSEETYKKVVGQFPFQDIELEKQPFPKKFPFS
EFVPKVYNQIKEFIYACLKFSEDLHLSSTEVDDMIRKSTNLLLTRTLSNSLQNVIKRKNIGLTELVQIII
NTTHLEKSCKYLEEFITNITNVLPETVHTTKLYGTTTFKDARHAAEEEIYTNLNQKIDQFLQLADYDWMT
GDLDNKASDYLVDLIAFLRSTFAVFTHLPGKVAQTACMSACKHLATSLMQLLLEAEVRQLTLGALQQFNL
DVRECEQFARSGPVPGFQEDTLQLAFIDLRQLLDLFIQWDWSTYLADYGQPNCKYLRVNPVTALTLLEKM
KDTSRKNNMFAQFRKNERDKQKLIDTVAKQLRGLISSHHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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