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Report for CCDS50506.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50506.1 Public Mus musculus 2 Nsun6 23 108 98 CCDS HistoryNCBI Gene:74455Re-query CCDS DB by CCDS ID:50506.1Re-query CCDS DB by GeneID:74455See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50506.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114715.7 ENSMUSP00000110363.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114715.7Link to Ensembl Protein Viewer:ENSMUSP00000110363.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114715Re-query CCDS DB by Protein ID:ENSMUSP00000110363
Original member Current member NCBI NM_001165943.2 NP_001159415.1 Accepted alive Link to Nucleotide Sequence:NM_001165943.2Link to Protein Sequence:NP_001159415.1Re-query CCDS DB by Nucleotide ID:NM_001165943Re-query CCDS DB by Protein ID:NP_001159415Link to BLAST:NP_001159415.1

Chromosomal Locations for CCDS 50506.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 14996313 14996546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 14998167 14998292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 15009410 15009558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 15013140 15013284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 15030029 15030148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 15036275 15036356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 15038074 15038227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 15039733 15039842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 15042227 15042306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 15047148 15047225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1278 nt):
ATGACAACTGTCAGAGTGAATACGCATTTAGGCTCAGTTCAGCATGTCAGAGGTCTGCTGCTTGAAGAGC
TCCAGAAGCAGTTTGGTGAATCCAGCATTCCTGTTGTTCAGCATCCAGCCCTCCCGGATGTCTTGCTCAT
CCCCATGACTGGACCAAGGAAGAATATAGAAAGACAACAGGGTGAAGTGATTGTTGGCGCACAGTGTGGC
AATGCAGTGTTAAGAGGGGCCCATGTCTATGTTCCAGGAATTGTGTCAGCTTCAAAATTTATGAAAGCTG
GAGATGTTATTTCCGTGTATTCTGATATTAACGGCAAATGTAAGAAAGGAGCCAAAGAATTTGATGGAAC
TAAAGTATTTCTCGGAAACGGAATTTCTGAACTGAGCCGCAAAGATATCTTCAATGGGTTACCTGATCTG
AAAGGTATAGGCATAAGAATGACAGAACCCATATATCTCAGTCCCTCGTTTGACAATGTTCTACCCAGTT
ATATATTTTTACAGAATTTACCATCTACAGTTGTAGCTCATGTTCTTGATCCTCAACCTGGAGAGAAGAT
TCTAGATATGTGTGCAGCCCCTGGGGGCAAAACTACACATACTGCAGCACTGATGCAGGACAAGGGAGAA
GTAATAGCATTGGACAAAATATTGACAAAAGTGAACAAACTGAAGCAGAATGCTTCATTATTAGGGCTTC
ATTCTATCCGGGCATTTTGCTTCGATGCAACAAAGGCACTTAAGCTTGATACTACCGATGGCATAGAAGG
GGGGCCTCCATTCTTACCAGAATCTTTTGACCGAATTATCCTTGATGCACCCTGCAGTGGAATGGGACAG
AGGCCAAATATGGCTTGTACTTGGACTTTAAAGGAAGTGACATCCTATCAGCCACTACAGCGAAAACTCC
TTCATGTGGCAGTTCAACTCCTGAAGCCAGGGGGAGTGCTGGTCTACAGCACATGCACAATAACCTTGGC
AGAAAATGAAGAGCAAGTTGCCTGGGCCCTCCGAACATTCCCCTGCCTTCAGCTTCAACCCCAGGAACCA
CAGATTGGAGGAGAAGGGATGGTGGGAGCTGGCCTGACATTGGAGCAATTGAAGCAGCTGCAGCGATTTG
ATCCGTCTGTTGTACCACTGCAGAACATGGACACTGATTCTCTTGGAGAGGCCAGAAGGGAAGACATGAT
TTGGTTGGCCAACAAAGACTGTATAGGCTTCTTTATTGCAAAGTTTCTAAAATGTCAAAGCACAAAAGCG
AAGGTTTCTCAGAAATGA

Translation (425 aa):
MTTVRVNTHLGSVQHVRGLLLEELQKQFGESSIPVVQHPALPDVLLIPMTGPRKNIERQQGEVIVGAQCG
NAVLRGAHVYVPGIVSASKFMKAGDVISVYSDINGKCKKGAKEFDGTKVFLGNGISELSRKDIFNGLPDL
KGIGIRMTEPIYLSPSFDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTTHTAALMQDKGE
VIALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALKLDTTDGIEGGPPFLPESFDRIILDAPCSGMGQ
RPNMACTWTLKEVTSYQPLQRKLLHVAVQLLKPGGVLVYSTCTITLAENEEQVAWALRTFPCLQLQPQEP
QIGGEGMVGAGLTLEQLKQLQRFDPSVVPLQNMDTDSLGEARREDMIWLANKDCIGFFIAKFLKCQSTKA
KVSQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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