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Report for CCDS85884.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85884.1 Public Mus musculus Y Gm20747 23 108 98 CCDS HistoryNCBI Gene:434960Re-query CCDS DB by CCDS ID:85884.1See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85884.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179137.1 ENSMUSP00000136937.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179137.1Link to Ensembl Protein Viewer:ENSMUSP00000136937.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179137Re-query CCDS DB by Protein ID:ENSMUSP00000136937
Original member Current member EBI ENSMUST00000187856.1 ENSMUSP00000139491.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000187856.1Link to Ensembl Protein Viewer:ENSMUSP00000139491.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000187856Re-query CCDS DB by Protein ID:ENSMUSP00000139491
Original member Current member NCBI NM_001025241.3 NP_001020412.1 Accepted alive Link to Nucleotide Sequence:NM_001025241.3Link to Protein Sequence:NP_001020412.1Re-query CCDS DB by Nucleotide ID:NM_001025241Re-query CCDS DB by Protein ID:NP_001020412Link to BLAST:NP_001020412.1

Chromosomal Locations for CCDS 85884.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome Y (NC_000087.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 53416092 53416775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGACATCACTCAAGAAGAAGAGTAGGAGGAAGCCTTCTTCCCAGGCCCTGGGGAATATTGTTGGCTGCA
GAATTTCTCATGGGTGGAAGGAAGGTAATGAGCCTGTCACCCATTGGAAGGCCATCATTCTAGGTCAACT
GCCAACAAACCCTTCTCTTTATTTGGTGAAGTATGACGGAATTGACAGTGTCTACGGACAGGAGCTCCAC
AGCGATGAGAGGATTTTAAATCTTAAGGTCTTGCCTCACAAAGTAGTTTTTCCTCAGGTGAGGGATGTCC
ACCTCGCAGGCGCACTGGTTGGCAGAGAGGTACAACACAAATTTGAGGGGAAAGATGGCTCTGAGGACAA
CTGGAGTGGGATGGTGCTAGCCCAGGTGCCATTCTTACAGGACTATTTTTACATTTCCTACAAGAAGGAT
CCGGTCCTCTACGTCTATCAGCTCCTGGATGACTACAAGGAAGGTAACCTCCACATCATTCCAGAGACCC
CTCTGGCTGAGGCGAGATCAGGTGATGACAATGACTTCTTAATAGGTTCCTGGGTGCAGTACACCAGAGA
TGATGGATCCAAAAAGTTCGGAAAGGTTGTTTACAAAGTTCTAGCCAATTCTACTGTGTACTTTATCAAA
TTTCTCGGTGACCTCCATATCTATGTCTATACTCTGGTGTCAAATATCACTTAA

Translation (227 aa):
MTSLKKKSRRKPSSQALGNIVGCRISHGWKEGNEPVTHWKAIILGQLPTNPSLYLVKYDGIDSVYGQELH
SDERILNLKVLPHKVVFPQVRDVHLAGALVGREVQHKFEGKDGSEDNWSGMVLAQVPFLQDYFYISYKKD
PVLYVYQLLDDYKEGNLHIIPETPLAEARSGDDNDFLIGSWVQYTRDDGSKKFGKVVYKVLANSTVYFIK
FLGDLHIYVYTLVSNIT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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