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Report for CCDS15589.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15589.1 Public Mus musculus 1 Ccdc185 23 108 98 CCDS HistoryNCBI Gene:433386Re-query CCDS DB by CCDS ID:15589.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15589.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060041.6 ENSMUSP00000095053.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060041.6Link to Ensembl Protein Viewer:ENSMUSP00000095053.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000060041Re-query CCDS DB by Protein ID:ENSMUSP00000095053
Original member Current member NCBI NM_001033547.2 NP_001028719.1 Accepted alive Link to Nucleotide Sequence:NM_001033547.2Link to Protein Sequence:NP_001028719.1Re-query CCDS DB by Nucleotide ID:NM_001033547Re-query CCDS DB by Protein ID:NP_001028719Link to BLAST:NP_001028719.1

Chromosomal Locations for CCDS 15589.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 182747257 182749122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1866 nt):
ATGGCCGGTTTCCATCTCTTCTCCCCACGGTCCTATGGGGAGCTCGGGGAACCCTTGCTAGCTGGAGAGC
AGGAGTTCGCAGCCCAGCTGGGCTGGTCTGAGTTGTCTCTGAGTCCCTGGGCCCAGACTCCTGGCGCCGA
GATCGAGACCGAGGTGCCCTGGGTGCACCCAAAGTGTTCGCCCACTGGGCGGTCCCGCCGGCGTGGGTAT
ATGACCTTGCCACGAGAAAGCCACAGCCTGACATACGTGGCCCGAAGACCCTCGGACCGAGCCAGGAAGC
ACAGGTCCGGCAGCCTCTGCCTGGAAGGAGCCTGCGGGGAGGCACCAACCAAGTCCAGCAGAACCTGGCA
GCAGCAGCAGCCGCCACGGGATCAACCCAGCCCGCGCTACCCTGCAGCCCGGGGAGATTCATCCCTGCAG
TACATCCGGGAAGCTTTCAGTCCCCCGAATGCTGGAACGTTGCTTGTAGAAAACACACACCCTGGAGACC
GGTGGGCAGTGCCGGTGGGCAGACGTGTAGGTCTCTGGTCTCCTTCCTCGGTTCTCACCGACAAGTCCTC
TGTTCACTCCCTAGAGTTATGTAAGCAATCCACCCAGAATAGGAGTAACCGCGACCTGACTGAGTCCTTA
AACAAGTATGACTGTCCCTCTGCCTCCTGCAAAGAGAAGAGTAGCCAGCACGCTCAGGTCCTCAAGAGCA
AGCTGGACGAGACGGTTATATCTTTGAGGGACCAGAAGATCTTGGCCCTGGTGCTGAGCAGGCTCAAGAA
GGCCCAGAGGATGCGAGAGCTGCAGCAACAGGCTGCAGTCGCCTGGGAAGAGCTGAAGCGCTCAGACCAG
AAAGTTCACTTGACCCTCGAGAGAGAGCGCAAGCTGCTGCTGCTGCAGAGCCAGGAGCAATGGCAAGGAC
AGAGGGAACAGCACAAGCCTCAGAGGGGCCATGGCCATGAGCAGCCTCACCAGGGTTACAAGCAGCAGGG
ACCGCGGCGCGACCGCCAGGCAAGGAGCGCTGTTCGGTCAGAGAACGAGAGTGAGTGGATGGTTCAAGCT
GACAACCCGGAGATCCGAGGCCTGGCCAAGATGGACAAGGTGCAAGCGCAGGCCGAGCATCTCAAACAGT
GCCAAGTGCAGAGTCTGCGGGAGCAGGAGAGGGTGCTGCAGAGTGTTCGGGACCTGAACAGGCTGCAGCT
GCAGAAGAGGCTGGAGATAGCGGGTCACAAGAGGGAGCATGTGATGATGGAGAGCCCGAAGAAGCTCCAG
GAGAGCAACCTGAGCACGGTTGTCAACTTCCAGGCCCGCAAGGTTCTCATGGACTGCCAGGCCAAGGCGG
AGGAACTCCTCAGGAAGCTGTCGCTGGAGCAGAGTTCCCAGAGCTCCCAGAGCTACCAGGACATCCAAAA
GGGTCTGGTGAAGGAGCAGAGGCACAGAGAGCAGCAGGCAAAGGCCCAGACTGAGGCAGAGCAGTTCCAG
AGAAGGAGATGGCATGCCGAGGAGGCAGAGGAGCTGCTCCAAGTGAGCAAGCGGGTGCTGGCAGAGCTGG
CTGAACAGAAGAGCAGGCAGGCCAGGAGTCATGCGCACAAGACCACCAGGGACAGGGCGCAGCACCTGCA
GGAGCTGAACATCCTGCGCGAGAGGAACCATCATATCTTGAAGCTGACAGCGGAGAAGGAGGAGAAGTGT
CACATCAAGGGCATCAAGGAAGCCATCAAGAAGAAGGAACAAAGGTTAGCGCAGATGACCTCAGGGAAAG
ATCCCATCTTCCAGGAGTATCAGAAGGGTCCCGCGTCCTCCAAGATAAACCGCTGCTTTGACCAGGTGGC
AGCAGAGCCCCAGCTGTCCGTGCACCTGCAGAGTGGAGTCTACTGA

Translation (621 aa):
MAGFHLFSPRSYGELGEPLLAGEQEFAAQLGWSELSLSPWAQTPGAEIETEVPWVHPKCSPTGRSRRRGY
MTLPRESHSLTYVARRPSDRARKHRSGSLCLEGACGEAPTKSSRTWQQQQPPRDQPSPRYPAARGDSSLQ
YIREAFSPPNAGTLLVENTHPGDRWAVPVGRRVGLWSPSSVLTDKSSVHSLELCKQSTQNRSNRDLTESL
NKYDCPSASCKEKSSQHAQVLKSKLDETVISLRDQKILALVLSRLKKAQRMRELQQQAAVAWEELKRSDQ
KVHLTLERERKLLLLQSQEQWQGQREQHKPQRGHGHEQPHQGYKQQGPRRDRQARSAVRSENESEWMVQA
DNPEIRGLAKMDKVQAQAEHLKQCQVQSLREQERVLQSVRDLNRLQLQKRLEIAGHKREHVMMESPKKLQ
ESNLSTVVNFQARKVLMDCQAKAEELLRKLSLEQSSQSSQSYQDIQKGLVKEQRHREQQAKAQTEAEQFQ
RRRWHAEEAEELLQVSKRVLAELAEQKSRQARSHAHKTTRDRAQHLQELNILRERNHHILKLTAEKEEKC
HIKGIKEAIKKKEQRLAQMTSGKDPIFQEYQKGPASSKINRCFDQVAAEPQLSVHLQSGVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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