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Report for CCDS38330.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38330.1 Public Mus musculus 2 Neurl2 23 108 98 CCDS HistoryNCBI Gene:415115Re-query CCDS DB by CCDS ID:38330.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38330.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042775.4 ENSMUSP00000041806.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042775.4Link to Ensembl Protein Viewer:ENSMUSP00000041806.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000042775Re-query CCDS DB by Protein ID:ENSMUSP00000041806
Original member Current member NCBI NM_001082974.2 NP_001076443.1 Accepted alive Link to Nucleotide Sequence:NM_001082974.2Link to Protein Sequence:NP_001076443.1Re-query CCDS DB by Nucleotide ID:NM_001082974Re-query CCDS DB by Protein ID:NP_001076443Link to BLAST:NP_001076443.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001076443.1 285 Q9D0S4 285 99.2982% 0 2

Chromosomal Locations for CCDS 38330.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164830872 164830987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164832699 164833440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGGCTGCTCCCTCCGAACACGTAGGACTGGGTGGCCCACGGAGCCCTGCGCGCCCAGAGCCCCCTCCCA
CCCGCTTCCACCAAGTGCATGGAGCCAACATCCGCATGGACCCCTCAGGAACGCGAGCCACACGCGTGGA
GAGTTTCGCCCACGGTGTGTGCTTCAGTCGTGAGCCCCTGGCCCCCGGCCAGGTATTTCTAGTGGAAATT
GAGGAAAAAGAGCTGGGCTGGTGCGGGCACTTACGTCTTGGCCTGACCGCTCTGGATCCCGCCAGTCTGG
CCGCTGTACCCGAGTTTTCACTGCCTGACTTGGTCAGCCTTGGCCACAGTTGGGTCTTCGCTATCACACG
CCACCACAACCGTGTGCCCCGGGAAGGTCAACCAGAAGCGGAGGCAGCGGTCCCCAGTGGTCCCCAAGCC
CTACTGGTTGAACCCTATCTGCGCATCGAGCAGTTCCGAATTCCCCGGGACCGTCTGGTGGGCCGCAGCC
GGCCAGGGCTTTATAGCCACCTCTTAGATCAGCTCTATGAACAAAACGTGCTGCCTCCTACAGCGCGCCG
AAGCCGCTTGGGTGTTCTCTTCTGCCCCCGTGAGGATGGGACCGCCGACATGCACATCATCATCAACGGG
GAGGACATGGGCCCTAGCGCCCGGGGGCTGCCAGCTGCTCAGCCCCTCTACGCTGTGGTAGATGTGTTTG
CTTCCACCAAGAGCGTGCGTCTGGTCCAGCTGGAGTATGGCTTGCCATCTCTGCAGACTCTGTGCCGACT
AGTGATCCAGAAGAGGGTGGTACACAGGCTGGCCATTGATGTGCTCCACCTGCCCAAAGGACTGAAGGAC
TTCTGCAAGTACGAATGA

Translation (285 aa):
MAAPSEHVGLGGPRSPARPEPPPTRFHQVHGANIRMDPSGTRATRVESFAHGVCFSREPLAPGQVFLVEI
EEKELGWCGHLRLGLTALDPASLAAVPEFSLPDLVSLGHSWVFAITRHHNRVPREGQPEAEAAVPSGPQA
LLVEPYLRIEQFRIPRDRLVGRSRPGLYSHLLDQLYEQNVLPPTARRSRLGVLFCPREDGTADMHIIING
EDMGPSARGLPAAQPLYAVVDVFASTKSVRLVQLEYGLPSLQTLCRLVIQKRVVHRLAIDVLHLPKGLKD
FCKYE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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