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Report for CCDS36515.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36515.2 Public Mus musculus 12 Cep128 23 108 98 CCDS HistoryNCBI Gene:75216Re-query CCDS DB by CCDS ID:36515.2Re-query CCDS DB by GeneID:75216See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 36515.1
The coding region has been updated to extend the N-terminus to represent an alternate exon or splice site that is more supported by the available transcript and protein data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 36515.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000141429.7 ENSMUSP00000115679.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000141429.7Link to Ensembl Protein Viewer:ENSMUSP00000115679.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000141429Re-query CCDS DB by Protein ID:ENSMUSP00000115679
Original member Current member NCBI NM_181815.3 NP_861536.3 Accepted alive Link to Nucleotide Sequence:NM_181815.3Link to Protein Sequence:NP_861536.3Re-query CCDS DB by Nucleotide ID:NM_181815Re-query CCDS DB by Protein ID:NP_861536Link to BLAST:NP_861536.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_861536.3 1102 Q8BI22-1 1102 100% 0 0

Chromosomal Locations for CCDS 36515.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 90999523 90999659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91008833 91008935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91019292 91019405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91022400 91022477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91063142 91063165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91083674 91083723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91213565 91213757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91230795 91230854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91234044 91234220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91255575 91255739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91259986 91260636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91266736 91267086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91289489 91289640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91294034 91294166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91296203 91296277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91298991 91299077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91325515 91325631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91333251 91333323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91339059 91339150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91347526 91347641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91348750 91348876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91364360 91364446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91366343 91366489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3309 nt):
ATGGCAGAGTCATCCAGTGATTCAGACCACGTCCGCTATCGTGACGGATTGAGTCGATGGGCAACCAGGT
CATTTCAAAGGGGAGTTGGAAGTCATTCTACAGTAGATGTCACCGCAAAGGTCAACACCATAACCAATAC
TTTACAGGACACCACTCGGAATCTGCGACATGTGGATCAGATGCTTGGGCGCTATCGCGAATACAGCACT
GGACAGGCGGGCGCTGTTGGGCAGTTAAAGGAGGATTTGGAGCAGTCAATAAACCAACTGAGGAGTCAGC
GCTTACGGAGAAGCTCAGGAGGGAGAAGTGTTTCTGTCACCAGCCTGAGTGCAAGTGACCTTGATGGTGG
CGCTGTGACAGAGAATCTCCGCTTTGCACCTACCTCACCTCTGAAGGACTACGACCTACAGGGGATTAAA
CGAAACAGGTTCAGAACGGGTGTTCGCTTTGTTTCGGAGACAGACGACATGGTCCAGCTCCATACTTTTC
ATCAGTCCCTCCGCGACCTCAGCAGTGAACAGGTTCGGCTTGGAGATGACCTCAACAGGGAGCTTTTCAG
AAGAAGCCGGTCTGACGCTGAAACCAAAAGGGTGTTAGAAGAATTGACTGGGAAGCTTAATGAAGTCCAG
AAGCCAGACGTGGTTTCAGATCGAGTGGAGCGGCGGCTGCAGGAAATAGAACGAGAGATGCGCTTAGAAA
GAGAGCTGGTGGAAAGACGTCATGATCAGCTGGGGCTCGTGTCCTTGAAGCTCCAGGAGGCACTGAAGAA
ACAAGAAGCTAAAGCAGATGAGAATGAGGACGTAATAAAAAGAAAGCTGCGACAAAGTGAAACCGAGAAG
AGCCAACTGGAACAGGAATTGGAGATCTCACGCAGGCTGCTGAGTCAATCTGAAAGCAATAGAGAAACGC
TTTTGCATCAGGTGGAAGAGCTGCGTACACAACTTATCAAAGCAGAAGGTGACCAAAGGGGTTTGCAGCA
TCAAGTACCTTGCATTTCCAAGCAACCATTAAGCCACCAGGATGATCAAGGGGATGACCGGAGGTTTAGA
AGAGGAGTAGAGCGGGAGAAACTGAGTCTGGAGAAGCAGATGGCAGATCTGCGAGTGCAGCTGAACTTCA
ACTCCATGGCTTCGGAGTTAGAGGAAGTGAAGCGGTGCATGGAACGGAAGGACCAGGAGAAAGCAACGCT
GGCCGCACAGATCGAGAACCTAACCCGGGACTTGGAGAACCGGGAAAAGCAACAGCTGCAGATGTTGGAC
CAACTGACGGAGATCCAGAATCACTTTGAGACCTGCGAGGCCAATCGTAAGCGGACCGACCTCCAGCTCT
CAGAGCTGAGTCAACACGCAGAGGAAGCGACCAAGCAGGCGGAACACTACCTTAGTGAGTTCCAGAGGTC
AGAGACCCTGCGAGAGGAGGCTGAGAAGAGGAGGGAGGACCTGAAAGCCAAGGCCCAGGAGTCCATCCGG
CAGTGGAAGCTGAAGCATAAGAAGTTGGAACGGTCAATGGAGAAACAAGCTGAAACCCTTGTCCAGCTGA
CAGAGAAGAACAACCAGTTTATAAAAGAGAGGGATGAACTGAAAAGCCAGCTTTGTGCAGCCTTACAGCA
GATCGAGAATCTTAGGAAGGAACTCAATGATGTCTTGAGCAAGCGTGCCCTGCAGGAAGAGGAGCTCCAC
TGTAAGGAGAAGAAGCTCAATGACATTGAGTCCCACCAAGCTGAACTCGAACTGGAGGTCAAGAATTCCC
TCGACACCATCCATAGATTGGAGAATGAGTTGAAAAGACAGAGTAAGAGTCAAAGCCAGATAAAGGCCGA
GAAAATTCACCTGGAGGAAGAAATTACAGAGCTCAAGAAGAGTCAGTCCCAGGACAAAGTCAAACTCCTT
GAGATGCAAGAGTCCATCAAGGACCTGAGTGCCATCCGAGCAGATCTCGCTAATAAACTGGCTGAGGAGG
AGAAAGCCAAGAAAGCTGTGTTCAGGGACCTTTCTGAGCTGACAGCCCAGGTAAAATCGAAAGAAGAAGA
AACCGCCACGGCTATCACACAGTTAAAGTTAGAACGAGACGTTCACCAGAGGGAGCTGGAAGACCTTAGC
TCCTCGTTGGAGAGTGTGAAGTTGAAGCACGAGCAGAATATCCAGGAGCTGATGAAGCACTTTAAGAAGG
AGAAGAGTGAAGCCGAGAGCCACATCAGGATGCTGAAGGCAGAAAGCTTGGAAGATAAGAATATGGCTAA
AGCCCATCTCGGTCAGCTAGAGAAGTTGAAATCCCAGTGTGAGAAACTGACGGAGGAATTAACCCACACT
GAAAATGAGAACAAAAAACTGAAGCTAAAATACCAGAGTCTTAAGGAGGAACTAGACAAGAAGGAGAAAT
ACATAAGTACCGAGGAAGAGCACCTAAGGCGGATGGAAGAGTCCAGGCTGCATCTCAAGGATCAGCTGCT
CTGTTTGGAGACGGAACAGGAATCCATTCTTGGTGTAATAGGGAAAGAGATTGATGAAGCTTGTAAGACT
TTCTCCAGAGACTCATTGGAGAAACTGAAAGTACTGACCTCTGGTCCTCAACTCCATTATGACCCACATC
GATGGTTAGCTGAAAGCAAGACTAAACTGCAGTGGCTGTGTGAGGAACTGAAAGAGAGAGAGAGCAGAGA
GAGGAGCATGCGGCAGCAGCTGGCGGCCTGCAGACAGGAGCTCCGGGAGCTGACGGAGCACAAGGAGTCT
GAGCTCCTGTGTCTGTTCGAGCACATTGAGAGGCAGGAACAGCTTCTGGAGGAGTTCCACCAGGAGAAGA
GAGGTCTGCTAGAAGAGACTCAAAGGAAAGATGAAGAAGTTGAAACTCTGCAGGACCGTGTAAATGCATT
ACAAATGAGTACCCGAGTGGCCTTGGACCATCTGGAGTCTGTGCCTGAGAAACTGAGCCTGCTAGAGGAT
TTCAAAGACTTCAGAGGTGCCTCCAGTTTATCTGAGAAAACTGATGGCAGGTATTCTAAATACAGTCTTC
ACGGAGATTCTGTTCAACAGCGCCGAGATGACACCAAACCCAGAATCAAGAGCTTTAGGGATGACAGGCC
CCTTTCTGCCGGTTCCCACGCTCATGGACTAGATCACTCCTCCTCTTGCCAGGACCACAGTCGCTTCCTG
TCTAGTCCACAGTTTTCACACTCCTTGCCAGTATTTACCAAAAGAACCATTGCCACAGATCCAGCATCAA
TCGAGGGAGATACCACAAGTTTACCAGCAAATGGAACAAGTCCACAGTCTAAGAAGGAGGAACACGAGAT
CAAAAAATACAAAAAGTGA

Translation (1102 aa):
MAESSSDSDHVRYRDGLSRWATRSFQRGVGSHSTVDVTAKVNTITNTLQDTTRNLRHVDQMLGRYREYST
GQAGAVGQLKEDLEQSINQLRSQRLRRSSGGRSVSVTSLSASDLDGGAVTENLRFAPTSPLKDYDLQGIK
RNRFRTGVRFVSETDDMVQLHTFHQSLRDLSSEQVRLGDDLNRELFRRSRSDAETKRVLEELTGKLNEVQ
KPDVVSDRVERRLQEIEREMRLERELVERRHDQLGLVSLKLQEALKKQEAKADENEDVIKRKLRQSETEK
SQLEQELEISRRLLSQSESNRETLLHQVEELRTQLIKAEGDQRGLQHQVPCISKQPLSHQDDQGDDRRFR
RGVEREKLSLEKQMADLRVQLNFNSMASELEEVKRCMERKDQEKATLAAQIENLTRDLENREKQQLQMLD
QLTEIQNHFETCEANRKRTDLQLSELSQHAEEATKQAEHYLSEFQRSETLREEAEKRREDLKAKAQESIR
QWKLKHKKLERSMEKQAETLVQLTEKNNQFIKERDELKSQLCAALQQIENLRKELNDVLSKRALQEEELH
CKEKKLNDIESHQAELELEVKNSLDTIHRLENELKRQSKSQSQIKAEKIHLEEEITELKKSQSQDKVKLL
EMQESIKDLSAIRADLANKLAEEEKAKKAVFRDLSELTAQVKSKEEETATAITQLKLERDVHQRELEDLS
SSLESVKLKHEQNIQELMKHFKKEKSEAESHIRMLKAESLEDKNMAKAHLGQLEKLKSQCEKLTEELTHT
ENENKKLKLKYQSLKEELDKKEKYISTEEEHLRRMEESRLHLKDQLLCLETEQESILGVIGKEIDEACKT
FSRDSLEKLKVLTSGPQLHYDPHRWLAESKTKLQWLCEELKERESRERSMRQQLAACRQELRELTEHKES
ELLCLFEHIERQEQLLEEFHQEKRGLLEETQRKDEEVETLQDRVNALQMSTRVALDHLESVPEKLSLLED
FKDFRGASSLSEKTDGRYSKYSLHGDSVQQRRDDTKPRIKSFRDDRPLSAGSHAHGLDHSSSCQDHSRFL
SSPQFSHSLPVFTKRTIATDPASIEGDTTSLPANGTSPQSKKEEHEIKKYKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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