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Report for CCDS49736.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49736.1 Public Mus musculus 15 Krt78 23 108 98 CCDS HistoryNCBI Gene:332131Re-query CCDS DB by CCDS ID:49736.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49736.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164932.2 ENSMUSP00000126197.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164932.2Link to Ensembl Protein Viewer:ENSMUSP00000126197.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164932Re-query CCDS DB by Protein ID:ENSMUSP00000126197
Original member Current member NCBI NM_212487.4 NP_997652.4 Accepted alive Link to Nucleotide Sequence:NM_212487.4Link to Protein Sequence:NP_997652.4Re-query CCDS DB by Nucleotide ID:NM_212487Re-query CCDS DB by Protein ID:NP_997652Link to BLAST:NP_997652.4

Chromosomal Locations for CCDS 49736.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 101946168 101948089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101948171 101948205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101948421 101948641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101950387 101950512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101950858 101951022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101951742 101951837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101952229 101952289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101953229 101953443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101953859 101954224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3207 nt):
ATGTCTCTCTCTCCATGCCGGGCCCAGAGGGGCTTCAGCGCCCACTCAGCGTGTTCTGCCTTTTCAGGGG
CTCGGGGCAGGACTGGCTTCAGCAGCAGGAGCCTTAGTTCCTCCAGGAGATGCAGAGGAAGCTCTTGTGG
GAGGGCCTGGGGGGCAGAGACCAGGCAAGGGATACGGTTTGGGCAGGGTAAGGGAGGGCCTGGATTTTCC
CAGTGCCCTCCAGGGGGCATCCAAGCAGTGACTGTCGACCAGAGTCTGCTGACCCCACTGAAGATCGAGG
TTGACCCCCAGTTCCAGGTGGTGAAGACACAGGAGACTCGAGAGATCAGAAGCCTCAACAACCAATTCGC
CTCCTTCATTGACAAGGTGCGCTTCCTGGAGCAACAGAACAAGGTACTGGAGACCAAGTGGGAGCTGCTG
CAGCAGCTGCAGGGCAATCGCAGCCCTCAGGGTCTAGAGTGCATCTTCGAAACCTGCCTAGCCCGACTCA
GGCAGCAGCTGGAGGAGCTGCAGAGAGAGCGAAGGGCTCTGGACTCTGAGCTGAAGACCTATCAGGACCA
GGAGGATGAATATAAGTCCAAGTATGACCAGGAAGCGTACAAGCACGCCTCTGTGCAGAATGATTTTGTG
GTCCTTAAGAAGGACGTGGATGAGGTTTTCCAGAGCAAGATGGATTTGGAAGGCAACCTGGAGTCTCTGA
AAGAACACGTCTGCTTCTTGACACGTCTGTATGAAGAAGAACTGGGACAGCTGAAGACGCAGGCAGACGA
CATGTCTGTGGTGCTGTCCATGGATAACAATCGTTGCTTGGACTTCAGCGACATCATTGCTGAGGTCCGT
GCCCGTTACGAGGAGATCACGCGGACTAGCAAGGCCGAGGCTGAGGCTGTGTTCCAGACCAAGTACCAGG
AACTCCAGGAATCAGCCCAGCTTCAAGGGAACAGCATGAAGGAAGCGCAGGTGCAGATTTCCCAGCTTCG
GCAGGCCATACATAGGCTGCAGAGTCAGATTGGGAGCCTCAGGAAGCAGAATGACAGTCTGCAGTCGGCC
ATCGCTGATGCTGAGCAGCAAGGGGAGATGGCTGTGAGGGATGCCCAGGCCAAGCTGGATGAGCTGGAGG
CTGCCCTGAGAACAGCCAAGCAGGACATGGCACAGATGCTACGTGACTACCAGGAACTGATGGGCACGAA
GTTGTCCCTGGATGTGGAGATCGCCATGTACCGGAGGTTGCTGGAGAGTGAGGAGTGCAGGATATCCACG
GAGCACACCAGCCAGGTCACTGTGTCTATAACAGAGGGCAGCATTGTGCCTGGAAGAACTTGTGGAGGCC
AAGTAGTTGTGCCTGGAAGAATTGGTACAGGCCAAGTGGTCATGCCTGGAAGGGAATGTGGAGGTCATGT
GGTCATGCCTGGAAGAGGATCTGGAGGCCAGGTGACCATTCCTGGAAGAGGATCTGGAGGCCAGGTGACC
GTGCCTAGAGGAGAATGTGGAGGCCAGGTGACCATGCCTGGGAGAGGATCTGGAGGCCAGGTGACCATGC
CTGGGAGAGGATCTGGAGGCCAGGTGACCATTCCTGGAAGAGGATCTGGAGGCCAAGTGACTGTGCCTGG
GAGAGGATCTGGAGGCCAAGTGACCATACCTGGGAGAGGATCTGGAGGCCAGGTGACCATTCCTGGAAGA
GGATCTGGAGGCCAAGTGACCGTGCCTGGGAGAGGATCTGGAGGCCAGGTGACCATTCCTGGGAGAGGAT
CTGGAGGCCAGGTGACCATTCCTGGAAGAGAATCTGGAGGCCAGGTGACCATTCCTGGAAGAGAATCTGG
AGGCCAGGTGACCATGCCTGGAAGAGAATATGGAGGCCAGGTGACCATTCCTGGAAGAGAATCTGGAGGC
CAGGTGACCATGCCTGGAAGAGGATCTGGAGGCCAGGTGACCATGCCTGGGAGAGGATCTGGAGGCCAGG
TGACCGTGCCTGGAAGAGAATATGGAGGCCAGGTGACCGTGCCTGGGAGAGGATCTGGAGGCCAGGTGAC
CGTGCCTGGGAGAGAATATGGAGGCCAGGTGACCGTGCCTAGAGGAGAATGTGGAGGCCAGGTGACAGTG
CCTGGAAGAGAATATGGAGGCCAGGTGACCATGCCTAGAGGAGAATGTGGGGGTCAAGTGACCATGCCTG
GAAGAGAATATGGAGGCCAGGTGACCATGCCTGGAAGAGAATCTGGAGGCCAGGTGACCGTGCCTGGAAG
AGAATATGGAGGCCAGGTGACCATGCCTAGAGGAGAATGTGGAGGCCAGGTGACCGTGCCTGGAAGAGAA
TATGGAGGCCAGGTGACCATGCCTAGAGGAGAATGTGGGGGTCAAGTGACCATGCCTGGAAGAGAATATG
GAGGCCAGGTGACCGTGCCTAGAAGAGAGTGTGGAGGCCAGGTGACCGTGCCTGGAAGAGAATATGGAGG
CCAGGTGACCATGCCTGGAAGAGAATCTGGAGGCCAGGTGACCGTGCCTGGGAGAGAATATGGAGGCCAG
GTGACCGTGCCTAGAGGAGAATGTGGAGGCCAGGTGACCGTGCCTGGGAGAGAATATGGAGGCCAGGTGA
CCGTGCCTAGAGGAGAATGTGGAGGCCAGGTGACCGTGCCTGGAAGAGAATATGGAGGCCAGGTGACCAT
GCCTAGAGGAGAATGTGGAGGCCAGGTGACCGTGCCTAGAGGAGAATGTGGGGGTCAAGTGACCATGCCT
GGAAGAGAATATGGAGGCCAGGTGACCGTGCCTGGAAGAGAATATGGAGGCCAGATGACCATGCCTGGAA
GAGAATGTGGAGGCCAAGAGGTCATTCCTAGAGGAGAATGTGGGGGTCAAGTGGTCATGCCTGGACAAGA
ATGTGGAGGCCAAGCAGTTATTCCGAGAGGAGACTGTGGAAGCCAAGTGGTCATTCCTAGAGAAGAATGT
GGGGGTCAAGTGTCCATGCCCAGAGGAGAATGTGGAGGCCAAGTGGGCACTTGTGGCCACAGAGGCTGGC
AAGGCAGCTTTGGGTCTGGAGGCTGCTCTAGCATCGTTACTGGTGGCTTCGAGATCCCCCAGGGATCTGG
ATACAGCCCCACCATGGGTTCCTGTTCCGTATCTGGCTCAGGCTTCAGTTCTGGCTCTGGCTCCAGCTGC
CGCACCATCCTGAAGAAGACAGTGGAATCAAGTCGGAAGATGTCTGTCATTTATTGA

Translation (1068 aa):
MSLSPCRAQRGFSAHSACSAFSGARGRTGFSSRSLSSSRRCRGSSCGRAWGAETRQGIRFGQGKGGPGFS
QCPPGGIQAVTVDQSLLTPLKIEVDPQFQVVKTQETREIRSLNNQFASFIDKVRFLEQQNKVLETKWELL
QQLQGNRSPQGLECIFETCLARLRQQLEELQRERRALDSELKTYQDQEDEYKSKYDQEAYKHASVQNDFV
VLKKDVDEVFQSKMDLEGNLESLKEHVCFLTRLYEEELGQLKTQADDMSVVLSMDNNRCLDFSDIIAEVR
ARYEEITRTSKAEAEAVFQTKYQELQESAQLQGNSMKEAQVQISQLRQAIHRLQSQIGSLRKQNDSLQSA
IADAEQQGEMAVRDAQAKLDELEAALRTAKQDMAQMLRDYQELMGTKLSLDVEIAMYRRLLESEECRIST
EHTSQVTVSITEGSIVPGRTCGGQVVVPGRIGTGQVVMPGRECGGHVVMPGRGSGGQVTIPGRGSGGQVT
VPRGECGGQVTMPGRGSGGQVTMPGRGSGGQVTIPGRGSGGQVTVPGRGSGGQVTIPGRGSGGQVTIPGR
GSGGQVTVPGRGSGGQVTIPGRGSGGQVTIPGRESGGQVTIPGRESGGQVTMPGREYGGQVTIPGRESGG
QVTMPGRGSGGQVTMPGRGSGGQVTVPGREYGGQVTVPGRGSGGQVTVPGREYGGQVTVPRGECGGQVTV
PGREYGGQVTMPRGECGGQVTMPGREYGGQVTMPGRESGGQVTVPGREYGGQVTMPRGECGGQVTVPGRE
YGGQVTMPRGECGGQVTMPGREYGGQVTVPRRECGGQVTVPGREYGGQVTMPGRESGGQVTVPGREYGGQ
VTVPRGECGGQVTVPGREYGGQVTVPRGECGGQVTVPGREYGGQVTMPRGECGGQVTVPRGECGGQVTMP
GREYGGQVTVPGREYGGQMTMPGRECGGQEVIPRGECGGQVVMPGQECGGQAVIPRGDCGSQVVIPREEC
GGQVSMPRGECGGQVGTCGHRGWQGSFGSGGCSSIVTGGFEIPQGSGYSPTMGSCSVSGSGFSSGSGSSC
RTILKKTVESSRKMSVIY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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