NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38839.1 Public Mus musculus 4 Skint9 23 108 98 CCDS HistoryNCBI Gene:329918Re-query CCDS DB by CCDS ID:38839.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38839.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058605.2 ENSMUSP00000052670.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058605.2Link to Ensembl Protein Viewer:ENSMUSP00000052670.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000058605Re-query CCDS DB by Protein ID:ENSMUSP00000052670
Original member Current member NCBI NM_177864.3 NP_808532.1 Accepted alive Link to Nucleotide Sequence:NM_177864.3Link to Protein Sequence:NP_808532.1Re-query CCDS DB by Nucleotide ID:NM_177864Re-query CCDS DB by Protein ID:NP_808532Link to BLAST:NP_808532.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808532.1 319 A7TZG3 319 100% 0 0

Chromosomal Locations for CCDS 38839.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 112386309 112386511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112389157 112389279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112390912 112391016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112391701 112391871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112413854 112414135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112419097 112419172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGGAGTCCTCAGCTTCTTGTTTACCTGGATTCTTCATGTCATTCCTTCTCTTACAGAACACAGTACTCA
CTCAAGCTATGAGATCAGATATAAAGATTAACATTCAGGTTCCAGATACAGAAGGACTACTGCTGGAGTG
TACTTCAGGAAGTTTGATCCCACCTGCTGAGATGACATGGAGAGACAGCAATGGAAATATAATTCCACAT
TCAACTGCATTTAACTCTCAGGATAGAGACGGATTATTGTATTTGAAGAGCAGCATTCTTCTGAAGAACA
GAGCAAAAGGTCCTATTACTTGCTCCATTTACAATGTAACTACTAATCAGGAGAAAAAGAGAAGTATTGT
CCTACCAGATGCCCTGTTCAAATCGGAGAATATGTCATTGATGTCAAACAAATTTTCATGTCCTTCAATA
TATTTAATCACTATAATTTTTCTTAATTTTCTCAGAGGAATACTTGTTTTTTGTTGTCTCAGAAGAAAAC
CTGTTTGTTTCAGAAATCTAATGAGTACAGTAATGGAAGCTTTGTATAGTAAAATGGGAGTTTGCTGTTT
GCTTATCTGGGAGTGCCTACTGTTAGTTTTGTATATTGCCTTCCTTCCTATCTACGTGAGTTTCAGAAGT
AGAGCTTTTCTTTTGGACGATACATATCCATTGTATACTAATTGGCTGTGGAACATATGCATAATCTTGA
CTGTTATAATGGTACTTTTCCCTGGCCTCATTTTGTGTCTACTTTGGACCCTGAACTGTTATGGTCAGGT
GTCTTCCTTACCTCCAACAAGTATGGAACTTTCCACAAAGGACTCTGAGCAAAATAGTTCTAAATCTGAT
GACTCCCAAGAAAATTATGACGTGAACTGCAAGATCCTAGAAACTTGTGAAAGTAAAATATTTAGTCAGC
ACCAAGAAAGTTGTGAAGATGATACAGCTTCAACCCTCTTCATCTCTTAA

Translation (319 aa):
MESSASCLPGFFMSFLLLQNTVLTQAMRSDIKINIQVPDTEGLLLECTSGSLIPPAEMTWRDSNGNIIPH
STAFNSQDRDGLLYLKSSILLKNRAKGPITCSIYNVTTNQEKKRSIVLPDALFKSENMSLMSNKFSCPSI
YLITIIFLNFLRGILVFCCLRRKPVCFRNLMSTVMEALYSKMGVCCLLIWECLLLVLYIAFLPIYVSFRS
RAFLLDDTYPLYTNWLWNICIILTVIMVLFPGLILCLLWTLNCYGQVSSLPPTSMELSTKDSEQNSSKSD
DSQENYDVNCKILETCESKIFSQHQESCEDDTASTLFIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH