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Report for CCDS4763.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4763.1 Public Homo sapiens 6 HLA-DOA 24 110 108 CCDS HistoryNCBI Gene:3111Re-query CCDS DB by CCDS ID:4763.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4763.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000229829.7 ENSP00000229829.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000229829.7Link to Ensembl Protein Viewer:ENSP00000229829.3Re-query CCDS DB by Nucleotide ID:ENST00000229829Re-query CCDS DB by Protein ID:ENSP00000229829
Original member Current member NCBI NM_002119.4 NP_002110.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002119.4Link to Protein Sequence:NP_002110.1Re-query CCDS DB by Nucleotide ID:NM_002119Re-query CCDS DB by Protein ID:NP_002110Link to BLAST:NP_002110.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002110.1 250 P06340 250 100% 0 0

Chromosomal Locations for CCDS 4763.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 33006838 33006841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33007080 33007215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33007311 33007592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33008013 33008261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33009455 33009536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGGCCCTCAGAGCAGGGCTGGTCCTGGGGTTCCACACCCTGATGACCCTCCTGAGCCCGCAGGAGGCAG
GGGCCACCAAGGCTGACCACATGGGCTCCTACGGACCCGCCTTCTACCAGTCTTACGGCGCCTCGGGCCA
GTTCACCCATGAATTTGATGAGGAACAGCTGTTCTCTGTGGACCTGAAGAAAAGCGAGGCCGTGTGGCGT
CTGCCTGAGTTTGGTGACTTTGCCCGCTTTGACCCGCAGGGCGGGCTGGCCGGCATCGCCGCAATCAAAG
CCCATCTGGACATCCTGGTGGAGCGCTCCAACCGCAGCAGAGCCATCAACGTGCCTCCACGGGTGACCGT
GCTCCCCAAGTCTCGGGTGGAGCTGGGCCAGCCCAACATCCTCATCTGCATCGTGGACAACATCTTCCCC
CCTGTGATCAATATCACCTGGCTGCGCAACGGCCAAACTGTCACTGAGGGAGTGGCCCAGACCAGCTTCT
ATTCCCAGCCTGACCATTTGTTCCGCAAGTTCCACTACCTGCCCTTCGTGCCCTCAGCCGAGGACGTCTA
TGACTGCCAGGTGGAGCACTGGGGCCTGGATGCGCCACTCCTCAGGCATTGGGAGCTCCAGGTGCCTATT
CCACCACCAGATGCCATGGAGACCCTGGTCTGTGCCCTGGGCCTGGCCATCGGCCTGGTGGGCTTCCTCG
TGGGCACCGTCCTCATCATCATGGGCACATATGTGTCCAGTGTCCCCAGGTAA

Translation (250 aa):
MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSVDLKKSEAVWR
LPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPKSRVELGQPNILICIVDNIFP
PVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPI
PPPDAMETLVCALGLAIGLVGFLVGTVLIIMGTYVSSVPR


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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