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Report for CCDS28568.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28568.1 Public Mus musculus 17 Spdef 23 108 98 CCDS HistoryNCBI Gene:30051Re-query CCDS DB by CCDS ID:28568.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28568.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025054.9 ENSMUSP00000025054.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025054.9Link to Ensembl Protein Viewer:ENSMUSP00000025054.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000025054Re-query CCDS DB by Protein ID:ENSMUSP00000025054
Original member Current member EBI ENSMUST00000167489.1 ENSMUSP00000127056.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167489.1Link to Ensembl Protein Viewer:ENSMUSP00000127056.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167489Re-query CCDS DB by Protein ID:ENSMUSP00000127056
Original member Current member NCBI NM_001357728.1 NP_001344657.1 Accepted alive Link to Nucleotide Sequence:NM_001357728.1Link to Protein Sequence:NP_001344657.1Re-query CCDS DB by Nucleotide ID:NM_001357728Re-query CCDS DB by Protein ID:NP_001344657Link to BLAST:NP_001344657.1
Original member Current member NCBI NM_013891.4 NP_038919.1 Accepted alive Link to Nucleotide Sequence:NM_013891.4Link to Protein Sequence:NP_038919.1Re-query CCDS DB by Nucleotide ID:NM_013891Re-query CCDS DB by Protein ID:NP_038919Link to BLAST:NP_038919.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344657.1 325 Q9WTP3 325 100% 0 0
NP_038919.1 325 Q9WTP3 325 100% 0 0

Chromosomal Locations for CCDS 28568.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 27714868 27715046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27717169 27717315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27717418 27717465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27718024 27718221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27719965 27720370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGGGCAGTGCCAGCCCAGGCCTGAGCAACGTGTCCCCCGGTTGCCTGCTACTGTTCCCAGATGTGGCAC
CACGAACAGGGACGGAGAAGGCAGCATCAGGAGCAATGGGCCCTGAGAAGCAGGAATGGAGTCCTAGTCC
ACCCGCCACCCCTGAGCAGGGCCTGTCTGCTTTCTACCTCTCTTACTTTAACATGTATCCCGACGATAGC
AGCTGGGTCGCCAAAGTCCCCGAGGCCCGTGCCGGGGAGGACCACCCGGAGGAGCCCGAGCAGTGTCCCG
TCATTGACAGCCAGGCCTCTGGGAGCACGTTGGATGAGCACTCGCTAGAGCAGGTGCAATCGATGGTTGT
GGGCGAGGTCCTGAAAGATATTGAGACGGCCTGCAAGCTTCTGAACATCACAGCAGACCCTGGGGACTGG
AGCCCTGGTAACGTGCAGAAGTGGCTTTTATGGACAGAACACCAGTACCGGCTGCCTCCAGCAGGCAAGG
CCTTCCAGGAGCTGGGCGGTAAGGAGCTGTGCGCCATGTCCGAGGAACAGTTCCGTCAGCGTGCACCCTT
GGGTGGGGATGTACTGCATGCCCACCTGGACATCTGGAAGTCAGCGGCCTGGATGAAGGAGAGGACCTCG
CCTGGGACCCTTCACTACTGCGCCTCCACCAGCGAGGAGGGCTGGACGGATGGTGAGGTGGACTCGTCGT
GCTCCGGGCAGCCCATTCACCTGTGGCAGTTCCTGAAAGAACTGCTGCTCAAGCCCCACAGCTATGGCCG
CTTCATCCGCTGGCTCAACAAGGAGAAAGGCATCTTCAAAATTGAGGACTCAGCACAGGTGGCCCGACTG
TGGGGTGTGCGCAAGAACCGGCCAGCCATGAACTATGATAAACTAAGCCGCTCCATCCGCCAGTATTACA
AGAAGGGCATCATTCGTAAACCCGACATCTCTCAGCGCCTTGTCTACCAATTTGTGCATCCAGTCTGA

Translation (325 aa):
MGSASPGLSNVSPGCLLLFPDVAPRTGTEKAASGAMGPEKQEWSPSPPATPEQGLSAFYLSYFNMYPDDS
SWVAKVPEARAGEDHPEEPEQCPVIDSQASGSTLDEHSLEQVQSMVVGEVLKDIETACKLLNITADPGDW
SPGNVQKWLLWTEHQYRLPPAGKAFQELGGKELCAMSEEQFRQRAPLGGDVLHAHLDIWKSAAWMKERTS
PGTLHYCASTSEEGWTDGEVDSSCSGQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARL
WGVRKNRPAMNYDKLSRSIRQYYKKGIIRKPDISQRLVYQFVHPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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