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Report for CCDS42843.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42843.1 Public Homo sapiens 2 RTP5 24 110 108 CCDS HistoryNCBI Gene:285093Re-query CCDS DB by CCDS ID:42843.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42843.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343216.3 ENSP00000345374.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000343216.3Link to Ensembl Protein Viewer:ENSP00000345374.3Re-query CCDS DB by Nucleotide ID:ENST00000343216Re-query CCDS DB by Protein ID:ENSP00000345374
Original member Current member NCBI NM_173821.3 NP_776182.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173821.3Link to Protein Sequence:NP_776182.2Re-query CCDS DB by Nucleotide ID:NM_173821Re-query CCDS DB by Protein ID:NP_776182Link to BLAST:NP_776182.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776182.2 572 Q14D33 572 100% 0 0

Chromosomal Locations for CCDS 42843.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 241869757 241869914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241871714 241873274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1719 nt):
ATGGACCGGGCTGGGGCAGACATGTGGGCCAGCACCTTCACCCTGGCCATGGCCGAGAGGAAGCCCCAGG
ACGTCTGGGTTCTGCTACCTGAGCACAGCCTGGTCCCGGGATGCCTGGACGGCGGTGGTGTCCAGTACCT
GCTGGTGGGGCTCTCGAGGCTCCAGTGCGGTCACTGTCCGGGGACCTGGGACTCGGCCCATGTGCACGTC
CTCTTCCACCTGTGGTGGGACAGGGCCAGCCACCGGGGGCTGGTGAAGATGCGCATCTGGGGCCAGCGGT
GCAGGCTGTGCCCCGCACCCGGGGACTGCCAGGTGAGGCCCCCGGGCGAGCAGCCCTTCCTCAGCAGGCT
GGTCTTGCACATCCTGCAGGACTGCTACGGGGATGGCCCCGGCCCAGCCCGGCACCCCAGGGAGGCCTAT
GAGGGCTGCTGTGAGGCCTGTGAGCTGGGGGTCTGCTTCCTCCAGAAGGCCCCAGACCCCGCCTGGAGCG
CCAACGCCACAAAAGGCAACTTCCCCGCCACGGCCTGGGGTGGCACTGGCACCGTCTCCAGGGGCAAACC
GCTGTCCACCCCTGGCGACGACCTTGGCAAGGGTGGCGTTGTCATCGCCATCCCCTTCTCCCTTGTGGGT
ACCAGCAATGACCAGGTGCCCATCGCTGAGGGCCCTGCCCCCCCTGCGGGGGCCTCTCTCCCTGTGACTG
GCAGCTGTGAGGCCCTGGTCATCGGCCAGGGCTCCATCTTCCTGTCTGGGGATTCAGTGGCCATGCCTGG
GGGCAAAGGCTTCCCGGTGGCCATTGGAGACCCCCTCTTCCACGGCCCCGGCCTCCTCGGCAGCAGCATC
CAGACCTTCGAGCTCAAGGGCTTCCTCTTCAAAGGCCGGGGCTCCCTCTGCAGCCCGGTTGGCGTGGCCC
AGGGCTGGGGCCCCATCTCCCTCAACAATGGCCTCGTCCCTGTGGGGAAACACACGCCAACCGTGTTCTA
CTGTGTGGGCCTCTCGGCCAGCGGGGAGGGCTCCCTCACCTTCCCCTCCTCCCTCACCAGCATCTTCACC
AACACCCTCTCGGAGCCCACCGATGGCCCTGTGGCCACTAAAGAGGCCTCCATCACCTTCCCCTTCATCT
TTACTGATGTCAAGGATGCCGTTGCTGAGGTGGCTGAAGGCAACGGGAAGGAAGGAGGCGGCCAGGGCCT
CGTCCCAGTGGGTCACGACGCCCTGCCAGAGACCAATGCTGGTGGCCTCCCCTCCCAGGTCAAGGGCTCC
CTTGCCCTCCCCTTCCCTGCTGATGTCCAAGGCAAAGATGCCTTTACTGACATCACTGAAGGCAAAGAGA
AGGAAGGTGGCCTGGTCACCGCGGGTCACGACGCCCCTCTGGAGGCCAATGCCGAGGGCCCCATCACGGT
TAGTGAGGGCTGCATCACCATCCCCTTCGCAGTCTTCGATGTCATAAAGCGCAAGGGCGGTGGCCACGTT
GCCTACGGCCCCCAGGGCAATGGCTGCTTCTCCCAAGGCTATTACCAGAAGAGGCAGCTGAGGTCCAGGT
TCCACAAGGCCCGCTGTGGGTGCCGCCGGGAGGAAGACGAGCGCCCTGGCCGTGCCTGCCGTAGGCCGCA
CGCCGAGCCCTACGAGGACTTCTGGATCTGGGTGTCCATGACCGTGTGCGTCTTCTGGCTGATGTGCATG
TGTCGGCTGAACCCCGGGATCTACCCGCAGCAAGTGTGA

Translation (572 aa):
MDRAGADMWASTFTLAMAERKPQDVWVLLPEHSLVPGCLDGGGVQYLLVGLSRLQCGHCPGTWDSAHVHV
LFHLWWDRASHRGLVKMRIWGQRCRLCPAPGDCQVRPPGEQPFLSRLVLHILQDCYGDGPGPARHPREAY
EGCCEACELGVCFLQKAPDPAWSANATKGNFPATAWGGTGTVSRGKPLSTPGDDLGKGGVVIAIPFSLVG
TSNDQVPIAEGPAPPAGASLPVTGSCEALVIGQGSIFLSGDSVAMPGGKGFPVAIGDPLFHGPGLLGSSI
QTFELKGFLFKGRGSLCSPVGVAQGWGPISLNNGLVPVGKHTPTVFYCVGLSASGEGSLTFPSSLTSIFT
NTLSEPTDGPVATKEASITFPFIFTDVKDAVAEVAEGNGKEGGGQGLVPVGHDALPETNAGGLPSQVKGS
LALPFPADVQGKDAFTDITEGKEKEGGLVTAGHDAPLEANAEGPITVSEGCITIPFAVFDVIKRKGGGHV
AYGPQGNGCFSQGYYQKRQLRSRFHKARCGCRREEDERPGRACRRPHAEPYEDFWIWVSMTVCVFWLMCM
CRLNPGIYPQQV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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