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Report for CCDS8771.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8771.1 Public Homo sapiens 12 RND1 24 110 108 CCDS HistoryNCBI Gene:27289Re-query CCDS DB by CCDS ID:8771.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8771.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309739.6 ENSP00000308461.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000309739.6Link to Ensembl Protein Viewer:ENSP00000308461.5Re-query CCDS DB by Nucleotide ID:ENST00000309739Re-query CCDS DB by Protein ID:ENSP00000308461
Original member Current member NCBI NM_014470.4 NP_055285.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014470.4Link to Protein Sequence:NP_055285.1Re-query CCDS DB by Nucleotide ID:NM_014470Re-query CCDS DB by Protein ID:NP_055285Link to BLAST:NP_055285.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055285.1 232 Q92730 232 100% 0 0

Chromosomal Locations for CCDS 8771.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 48857996 48858241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48860997 48861131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48862009 48862118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48864783 48864870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48865648 48865767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGAAGGAGAGACGGGCCCCCCAGCCAGTCGTGGCCAGATGTAAGCTCGTTCTGGTCGGGGACGTGCAGT
GTGGGAAGACCGCGATGTTGCAAGTGTTAGCGAAGGATTGCTATCCAGAGACCTATGTGCCCACCGTGTT
CGAAAATTACACAGCCTGTTTGGAGACAGAGGAACAGAGGGTGGAGCTTAGTCTCTGGGATACCTCAGGA
TCTCCCTACTACGATAATGTCCGTCCACTCTGCTACAGCGACTCGGATGCAGTATTACTATGTTTTGACA
TCAGCCGTCCAGAGACAGTGGACAGCGCACTCAAGAAGTGGAGGACAGAAATCCTAGATTATTGTCCCAG
CACCCGCGTTTTGCTCATTGGCTGCAAGACAGACCTGCGAACAGACCTGAGTACTCTGATGGAGCTGTCC
CACCAGAAGCAGGCGCCCATCTCCTATGAGCAGGGTTGTGCAATAGCAAAGCAGCTGGGTGCAGAAATCT
ACCTGGAAGGCTCAGCTTTCACCTCAGAAAAGAGCATCCACAGCATCTTTCGGACGGCATCCATGCTGTG
TCTGAACAAGCCTAGCCCACTGCCCCAGAAGAGCCCTGTCCGAAGCCTCTCCAAACGACTGCTCCACCTC
CCCAGTCGCTCTGAACTCATCTCTTCTACCTTCAAGAAGGAAAAGGCCAAAAGCTGTTCCATTATGTGA

Translation (232 aa):
MKERRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSG
SPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELS
HQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPSPLPQKSPVRSLSKRLLHL
PSRSELISSTFKKEKAKSCSIM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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