NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3515.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3515.1 Public Homo sapiens 4 STAP1 24 110 108 CCDS HistoryNCBI Gene:26228Re-query CCDS DB by CCDS ID:3515.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3515.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265404.7 ENSP00000265404.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265404.7Link to Ensembl Protein Viewer:ENSP00000265404.2Re-query CCDS DB by Nucleotide ID:ENST00000265404Re-query CCDS DB by Protein ID:ENSP00000265404
Original member Current member EBI ENST00000396225.1 ENSP00000379527.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396225.1Link to Ensembl Protein Viewer:ENSP00000379527.1Re-query CCDS DB by Nucleotide ID:ENST00000396225Re-query CCDS DB by Protein ID:ENSP00000379527
Original member Current member NCBI NM_001317769.2 NP_001304698.1 Accepted alive Link to Nucleotide Sequence:NM_001317769.2Link to Protein Sequence:NP_001304698.1Re-query CCDS DB by Nucleotide ID:NM_001317769Re-query CCDS DB by Protein ID:NP_001304698Link to BLAST:NP_001304698.1
Original member Current member NCBI NM_012108.4 NP_036240.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012108.4Link to Protein Sequence:NP_036240.1Re-query CCDS DB by Nucleotide ID:NM_012108Re-query CCDS DB by Protein ID:NP_036240Link to BLAST:NP_036240.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304698.1 295 Q9ULZ2 295 100% 0 0
NP_036240.1 295 Q9ULZ2 295 100% 0 0

Chromosomal Locations for CCDS 3515.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 67558810 67558929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67571084 67571155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67575385 67575498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67577203 67577259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67581305 67581471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67583574 67583702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67590884 67590953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67593260 67593356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67606296 67606357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (888 nt):
ATGATGGCTAAGAAGCCCCCAAAACCAGCCCCTCGCAGGATCTTCCAGGAAAGGTTAAAGATTACTGCTC
TACCTTTGTACTTTGAAGGTTTTTTATTAATCAAGCGGTCAGGATACCGGGAGTATGAGCATTACTGGAC
AGAGTTGAGAGGAACTACTCTTTTCTTTTATACCGACAAAAAGAGTATAATATATGTTGACAAATTAGAC
ATAGTAGACCTCACATGCCTTACTGAGCAGAATTCAACTGAAAAGAACTGTGCGAAATTCACCCTTGTTT
TGCCGAAAGAGGAAGTACAACTGAAGACAGAGAACACAGAAAGTGGGGAAGAATGGAGAGGCTTCATTCT
TACAGTAACAGAGCTGTCAGTTCCCCAAAACGTGTCACTCCTACCTGGGCAAGTAATTAAACTGCATGAA
GTCCTAGAGAGAGAAAAGAAAAGGAGGATTGAGACAGAGCAGAGTACGTCCGTGGAAAAAGAGAAGGAAC
CAACTGAAGATTATGTGGATGTACTGAACCCTATGCCAGCATGTTTTTATACAGTGTCCCGGAAAGAGGC
AACTGAGATGCTCCAGAAGAACCCTTCTTTGGGAAATATGATCCTGAGGCCTGGTAGTGACAGTAGAAAC
TACTCCATCACTATTCGGCAGGAGATAGACATTCCAAGAATCAAGCACTACAAAGTGATGAGCGTAGGAC
AAAACTACACTATTGAACTGGAAAAACCTGTAACACTCCCAAACCTTTTCAGTGTCATTGATTATTTTGT
GAAGGAGACTCGAGGAAATTTAAGACCATTTATATGTTCAACTGATGAAAACACTGGTCAAGAACCCAGT
ATGGAAGGGAGAAGTGAAAAGTTGAAGAAAAATCCACACATTGCATGA

Translation (295 aa):
MMAKKPPKPAPRRIFQERLKITALPLYFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLD
IVDLTCLTEQNSTEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTELSVPQNVSLLPGQVIKLHE
VLEREKKRRIETEQSTSVEKEKEPTEDYVDVLNPMPACFYTVSRKEATEMLQKNPSLGNMILRPGSDSRN
YSITIRQEIDIPRIKHYKVMSVGQNYTIELEKPVTLPNLFSVIDYFVKETRGNLRPFICSTDENTGQEPS
MEGRSEKLKKNPHIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH